Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011791.1 Corchorus capsularis cultivar CVL-1 contig11812, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192488

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1184--1213
14
2.1
14
100
0
60
46
0
6
46
1.29
2408--2440
15
2.2
15
94
0
57
36
12
15
36
1.84
3711--3753
3
14.3
3
100
0
86
67
0
0
32
0.91
4901--4931
15
2.1
15
100
0
62
48
19
19
12
1.81
26690--26769
35
2.4
35
89
6
121
37
20
10
32
1.85
37621--37650
2
15.0
2
100
0
60
50
0
0
50
1.00
42931--42993
30
2.1
30
100
0
126
36
15
6
41
1.73
44424--44451
14
2.0
14
100
0
56
71
0
0
28
0.86
45180--45235
27
2.1
27
83
6
69
21
28
12
37
1.90
46428--46508
41
2.0
41
100
0
162
35
9
12
41
1.76
46428--46525
41
2.4
41
89
6
128
38
8
11
41
1.71
46751--46801
25
2.0
25
96
0
93
39
23
19
17
1.92
47176--47202
11
2.5
11
100
0
54
48
11
0
40
1.39
47295--47365
35
2.0
35
88
2
106
39
16
19
23
1.92
47303--47371
35
2.0
35
100
0
138
37
14
20
27
1.91
47391--47428
19
2.0
19
100
0
76
47
15
5
31
1.68
47480--47552
36
2.0
36
97
0
137
23
35
5
35
1.78
47830--47877
24
2.0
24
91
0
78
27
22
20
29
1.99
48094--48127
15
2.3
15
89
0
50
47
26
2
23
1.66
70880--70948
34
2.0
34
94
0
120
49
2
17
30
1.61
73986--74012
14
1.9
14
100
0
54
0
62
0
37
0.95
75699--75942
108
2.3
109
93
4
415
49
1
11
37
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77686--77716
1
31.0
1
100
0
62
100
0
0
0
0.00
88642--88684
17
2.5
17
82
17
54
20
20
20
37
1.95
89405--89434
2
15.0
2
100
0
60
50
0
0
50
1.00
89700--89734
2
17.5
2
100
0
70
48
0
0
51
1.00
92127--92190
30
2.0
30
85
8
83
26
6
4
62
1.39
93243--93322
38
2.1
38
95
0
142
27
18
21
32
1.97
100067--100120
2
27.0
2
84
0
72
44
1
5
48
1.37
109218--109253
6
6.0
6
100
0
72
50
16
0
33
1.46
109627--109668
22
1.9
23
85
9
61
14
16
14
54
1.71
120802--120876
31
2.4
31
100
0
150
29
10
16
44
1.81
124012--124036
13
1.9
13
100
0
50
88
0
12
0
0.53
127383--127438
29
1.9
29
92
0
94
23
17
7
51
1.70
127525--127556
16
2.0
16
100
0
64
12
25
0
62
1.30
127949--127990
22
2.0
22
90
4
68
4
16
40
38
1.70
128277--128314
17
2.2
17
90
0
58
28
7
15
47
1.74
128366--128468
40
2.5
41
82
3
127
27
2
24
45
1.67
131013--131106
29
3.1
31
75
13
90
36
30
13
19
1.91
131990--132047
9
6.7
9
74
20
52
75
0
0
24
0.80
131991--132047
26
2.2
25
87
9
80
77
0
0
22
0.77
131993--132047
17
3.2
17
87
5
76
78
0
0
21
0.76
136645--136695
18
2.7
19
80
17
54
64
0
7
27
1.21
136657--136696
22
1.9
20
90
10
62
67
0
5
27
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
136719--136743
13
1.9
13
100
0
50
72
8
4
16
1.24
140683--140748
22
3.0
21
71
6
60
46
10
18
24
1.80
140725--140872
44
3.4
42
76
8
127
40
9
13
36
1.77
140725--140872
22
6.8
21
73
12
86
40
9
13
36
1.77
141362--141391
2
15.5
2
93
6
53
46
0
0
53
1.00
149229--149259
14
2.2
14
100
0
62
87
6
6
0
0.68
166538--166573
8
4.6
8
93
6
65
0
0
11
88
0.50
166538--166573
15
2.3
16
95
4
65
0
0
11
88
0.50
180647--180706
16
3.6
16
86
8
93
28
20
15
36
1.92
181776--181859
33
2.5
33
100
0
168
50
10
10
28
1.71
182477--184802
325
7.2
318
78
10
1964
36
15
14
33
1.88
184822--192005
643
11.1
640
78
8
5730
35
15
14
34
1.88
184813--192005
322
22.2
318
76
10
5705
35
15
14
34
1.88
188007--188040
2
17.0
2
93
0
59
47
0
0
52
1.00

Tables:   1

The End!