Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011792.1 Corchorus capsularis cultivar CVL-1 contig11813, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160054

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3038--3079
20
2.0
21
86
4
59
35
21
19
23
1.96
4677--4739
29
2.2
29
91
0
99
34
9
17
38
1.82
26926--26963
11
3.5
11
89
10
51
39
0
2
57
1.12
28359--28421
30
2.1
30
87
0
90
14
7
19
58
1.60
29671--29736
31
2.1
32
88
5
100
28
18
4
48
1.67
29865--29954
37
2.4
36
81
5
108
15
20
10
54
1.69
30014--30156
22
6.5
22
79
4
128
44
10
12
32
1.77
30029--30157
44
2.9
44
77
4
143
42
9
13
34
1.77
30257--30421
22
7.5
22
75
8
129
41
10
13
33
1.79
30258--30421
44
3.7
44
82
4
154
42
10
14
33
1.79
30238--30548
22
14.6
19
68
20
90
39
10
15
35
1.81
30445--30502
23
2.5
23
88
0
80
36
6
13
43
1.71
30491--30559
22
3.1
22
83
4
86
37
13
11
37
1.80
30601--30652
22
2.3
23
83
3
61
32
9
15
42
1.79
30711--30757
20
2.2
22
77
7
53
51
2
14
31
1.55
30800--30907
41
2.7
41
88
4
150
48
8
9
34
1.65
37122--37665
136
4.0
135
83
6
688
31
18
14
35
1.90
38828--38880
3
17.7
3
100
0
106
0
33
0
66
0.92
43144--43178
2
17.5
2
100
0
70
48
0
0
51
1.00
46623--46693
29
2.4
29
81
4
90
50
19
12
16
1.77
47412--47450
8
4.8
8
87
6
51
2
5
46
46
1.38
47529--47587
30
2.0
30
83
12
77
44
0
1
54
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48929--49020
34
2.8
33
90
4
141
17
35
32
14
1.90
48953--49007
17
3.2
17
68
0
56
16
38
34
10
1.84
48943--49020
34
2.4
34
95
4
142
16
37
34
11
1.85
67538--67590
24
2.2
24
86
0
79
18
28
7
45
1.77
77391--77454
28
2.3
28
94
0
110
28
3
42
26
1.70
80854--80881
12
2.3
12
100
0
56
35
7
25
32
1.83
84417--84441
12
2.1
12
100
0
50
32
8
8
52
1.60
92031--92056
1
26.0
1
100
0
52
0
0
0
100
0.00
111591--111754
81
2.0
82
91
1
267
35
15
14
34
1.88
111612--111773
81
2.0
81
86
2
227
36
14
14
35
1.86
133541--133565
2
12.5
2
100
0
50
48
0
0
52
1.00
139301--139326
8
3.2
8
100
0
52
61
0
0
38
0.96
140265--140310
5
9.4
5
86
9
60
80
0
17
2
0.81
148500--148540
21
2.0
20
85
4
55
19
12
12
56
1.67
159969--159995
2
13.5
2
100
0
54
51
0
0
48
1.00

Tables:   1

The End!