Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011793.1 Corchorus capsularis cultivar CVL-1 contig11814, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 28963
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:14777 original size:11 final size:11

Alignment explanation


    Indices: 14761--14785  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

      14751 TTTGCTTCAT

                       
      14761 ATATAATAATA
          1 ATATAATAATA

                       
      14772 ATATAATAATA
          1 ATATAATAATA

               
      14783 ATA
          1 ATA

      14786 GAACTTCAAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36


Consensus pattern (11 bp):   
ATATAATAATA

Found at i:24599 original size:32 final size:31

Alignment explanation


    Indices: 24546--24611  Score: 87
    Period size: 32  Copynumber: 2.1  Consensus size: 31

      24536 GCCCCTTACG

                *   *                     * 
      24546 TCAAGGGATAAATTGTCATGAATTTGGAAAGT
          1 TCAACGGACAAATTGTCATGAATTT-GAAAAT

                            *              
      24578 TCAACGGACAAATTGTTATGAATTTGAAAAT
          1 TCAACGGACAAATTGTCATGAATTTGAAAAT

               
      24609 TCA
          1 TCA

      24612 TAAACAAGAT


Statistics
Matches: 30,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  31    8  0.27
  32   22  0.73

ACGTcount: A:0.39, C:0.09, G:0.20, T:0.32


Consensus pattern (31 bp):   
TCAACGGACAAATTGTCATGAATTTGAAAAT
Done.