genome.fa.s11794.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011794.1 Corchorus capsularis cultivar CVL-1 contig11815, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153445

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5395--5442	23	2.0	24	84	11	64	56	16	10	16	1.67
6619--6666	24	2.0	24	92	8	80	66	4	8	20	1.35
7255--7286	16	2.0	16	100	0	64	37	12	12	37	1.81
12453--12489	2	18.5	2	100	0	74	48	0	0	51	1.00
13972--14063	28	3.1	29	76	9	89	47	17	15	19	1.82
40700--40726	2	13.5	2	100	0	54	51	0	0	48	1.00
43790--43815	13	2.0	13	100	0	52	46	15	30	7	1.74
48107--48208	51	2.0	51	100	0	204	27	19	25	27	1.99
49599--49654	2	28.0	2	78	7	60	51	5	1	41	1.35
51819--51848	2	15.0	2	100	0	60	50	0	0	50	1.00
52612--52823	89	2.4	86	79	7	230	35	25	8	31	1.85
55465--55490	6	4.3	6	100	0	52	50	0	34	15	1.45
56730--56788	30	2.0	29	93	3	100	16	6	27	49	1.71
57764--57806	22	2.0	22	86	9	61	11	27	39	20	1.88
59866--59900	18	1.9	18	88	0	52	51	20	0	28	1.47
70678--70725	18	2.9	17	80	20	50	41	0	0	58	0.98
92840--92895	16	3.4	16	71	9	58	25	32	1	41	1.66
92839--92906	34	2.0	34	100	0	136	26	29	2	41	1.70
92855--92907	18	3.1	18	67	10	56	26	32	3	37	1.74
92850--92908	16	3.6	16	71	10	57	27	32	3	37	1.73
95366--95986	322	2.0	307	82	7	739	36	16	14	33	1.89
96230--96298	31	2.2	31	92	0	111	26	11	13	49	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97810--97835	2	13.0	2	100	0	52	50	0	0	50	1.00
96349--98672	324	7.2	320	84	7	2856	35	16	13	33	1.88
100217--102185	321	6.2	319	86	5	2641	35	16	13	34	1.87
100217--102100	618	3.0	618	87	4	2379	35	16	13	34	1.87
102629--105046	642	3.8	637	88	4	3390	36	15	12	35	1.85
102626--105421	320	8.7	318	81	7	3003	36	15	12	35	1.85
105037--105069	2	16.0	2	93	6	57	48	0	3	48	1.17
105039--105067	15	1.9	15	100	0	58	48	0	3	48	1.18
105037--105069	17	1.9	17	100	0	66	48	0	3	48	1.17
105648--105705	23	2.5	22	78	13	62	62	1	12	24	1.39
107671--107745	37	2.0	37	82	5	89	34	12	18	34	1.88
106990--108004	444	2.3	440	82	5	1219	31	12	12	42	1.80
108572--108606	17	2.0	18	88	5	54	34	20	5	40	1.76
110407--110443	15	2.5	15	90	0	56	18	8	29	43	1.79
117941--117965	2	12.5	2	100	0	50	52	0	0	48	1.00
119197--119246	24	2.0	25	84	3	66	44	10	6	40	1.63
120424--120456	2	16.5	2	100	0	66	48	0	0	51	1.00
134679--134709	15	2.1	15	100	0	62	48	25	0	25	1.52
140279--140349	24	3.1	24	78	9	69	16	12	53	16	1.73
140352--140420	24	2.9	24	93	0	111	18	13	52	15	1.75
140424--140453	12	2.5	12	88	0	51	13	23	46	16	1.82
145136--145190	26	2.1	26	93	0	92	49	16	16	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147896--147936	5	8.8	5	82	15	52	85	0	14	0	0.60
151053--151156	2	52.0	2	100	0	208	50	0	50	0	1.00
152689--152726	11	3.5	11	89	10	51	39	0	2	57	1.12

Tables:   1

The End!