Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011797.1 Corchorus capsularis cultivar CVL-1 contig11818, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2374
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39


Found at i:492 original size:21 final size:20

Alignment explanation


    Indices: 448--493  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 20

        438 AATCTTGTAA

                               *
        448 TATAAAATTACTAAAAAAGT
          1 TATAAAATTACTAAAAAAGC

                       *     *   
        468 TATAAAAGTTATTAAAATAGC
          1 TATAAAA-TTACTAAAAAAGC

                 
        489 TATAA
          1 TATAA

        494 TTCTTTCCAC


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  20    7  0.32
  21   15  0.68

ACGTcount: A:0.57, C:0.04, G:0.07, T:0.33


Consensus pattern (20 bp):   
TATAAAATTACTAAAAAAGC
Done.