Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011798.1 Corchorus capsularis cultivar CVL-1 contig11819, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47225

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49--150
46
2.3
46
82
3
118
41
12
7
38
1.72
49--346
22
13.7
22
69
14
111
36
15
8
39
1.78
181--349
44
3.8
43
74
12
146
33
16
9
40
1.81
332--398
19
3.5
19
85
6
91
23
19
11
44
1.84
504--628
22
5.7
22
77
5
119
34
13
9
42
1.77
479--649
44
3.9
43
77
9
139
35
12
10
42
1.77
567--649
22
3.8
21
77
3
85
36
12
12
39
1.80
504--787
22
12.7
22
65
20
76
34
14
10
41
1.80
1026--1110
22
3.9
22
92
0
134
34
16
14
35
1.89
1026--1133
22
4.9
22
87
2
101
35
17
12
34
1.88
1223--1289
31
2.1
31
89
8
100
46
4
19
29
1.69
1318--1360
2
21.0
2
90
4
68
46
0
4
48
1.22
1279--1431
82
1.9
82
98
0
297
39
11
7
41
1.70
11254--11292
18
2.2
18
90
0
60
48
17
7
25
1.74
13589--13621
16
2.1
16
100
0
66
33
18
42
6
1.75
14320--14349
14
2.1
14
93
0
51
33
46
20
0
1.51
16661--16690
12
2.6
12
94
5
53
60
23
10
6
1.52
16782--16818
19
2.1
19
90
10
60
10
21
16
51
1.74
18743--18769
14
1.9
14
100
0
54
33
22
14
29
1.94
23957--23991
3
11.3
3
93
6
61
34
0
0
65
0.93
24006--24073
34
2.0
34
91
0
109
45
11
16
26
1.81
24070--24119
24
2.1
24
100
0
100
24
24
8
44
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40730--40890
78
2.1
79
95
1
288
32
24
13
28
1.94
40913--41054
52
2.7
54
83
9
163
31
19
14
35
1.91
41470--41682
88
2.4
88
82
7
243
30
19
14
36
1.91
46735--46761
2
13.5
2
100
0
54
51
0
0
48
1.00

Tables:   1

The End!