Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011805.1 Corchorus capsularis cultivar CVL-1 contig11826, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69813

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2821--2864
22
2.0
22
86
0
61
27
29
22
20
1.99
12918--12954
2
18.0
2
88
5
56
45
2
2
48
1.30
12923--12962
12
3.3
12
92
0
62
47
0
5
47
1.24
23763--23793
16
1.9
16
93
0
53
29
22
0
48
1.51
24666--24729
31
2.1
31
81
0
74
35
26
23
14
1.93
24818--24854
19
1.9
19
94
0
65
37
18
21
21
1.94
24806--24928
48
2.6
48
100
0
246
42
19
17
20
1.90
24866--24902
19
1.9
19
94
0
65
37
18
21
21
1.94
27674--27702
13
2.2
13
100
0
58
34
17
6
41
1.76
33575--33614
6
6.7
6
94
0
62
0
55
0
45
0.99
34609--34721
48
2.4
48
100
0
226
29
7
16
46
1.73
43122--43197
35
2.2
35
88
4
109
35
15
9
39
1.80
45830--45854
1
25.0
1
100
0
50
0
0
0
100
0.00
51085--51216
66
2.0
66
95
0
237
23
22
26
27
2.00
55577--55611
14
2.4
14
95
4
61
74
5
0
20
1.02
55576--55611
15
2.4
16
86
13
58
75
5
0
19
1.00
57259--57311
26
2.0
26
100
0
106
30
9
26
33
1.88
60484--60513
7
4.3
7
100
0
60
40
13
13
33
1.83
68709--69004
109
2.7
109
90
4
441
37
10
1
50
1.48

Tables:   1

The End!