Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011806.1 Corchorus capsularis cultivar CVL-1 contig11827, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8203
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33


Found at i:1599 original size:14 final size:14

Alignment explanation


    Indices: 1582--1611  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1572 CTGACCTGAC

                          
       1582 CAGTTAAACATAAA
          1 CAGTTAAACATAAA

                          
       1596 CAGTTAAACATAAA
          1 CAGTTAAACATAAA

              
       1610 CA
          1 CA

       1612 TATATTAGGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.57, C:0.17, G:0.07, T:0.20


Consensus pattern (14 bp):   
CAGTTAAACATAAA

Found at i:6416 original size:18 final size:18

Alignment explanation


    Indices: 6372--6408  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       6362 TTACAATAAC

                              
       6372 ATCATAGTTTAAAATATA
          1 ATCATAGTTTAAAATATA

                        *     
       6390 ATCATAGTTTAAGATATA
          1 ATCATAGTTTAAAATATA

             
       6408 A
          1 A

       6409 ATATAGTTAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38


Consensus pattern (18 bp):   
ATCATAGTTTAAAATATA
Done.