Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011807.1 Corchorus capsularis cultivar CVL-1 contig11828, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35468

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1453--1484
2
16.0
2
100
0
64
50
0
0
50
1.00
2528--2591
33
1.9
33
93
0
110
40
9
14
35
1.78
10478--10586
46
2.4
45
81
3
121
40
14
6
38
1.72
10307--10833
22
24.6
22
68
13
187
35
15
8
39
1.78
10657--10775
43
2.8
40
75
19
105
36
13
7
42
1.73
10767--10833
19
3.5
19
89
2
98
23
19
10
46
1.81
10915--11129
22
9.7
22
68
11
84
36
12
9
41
1.75
10912--11064
66
2.3
66
80
2
164
36
13
9
40
1.77
11183--11279
22
4.4
22
69
10
81
39
15
10
35
1.81
11343--11481
22
6.2
22
82
5
86
38
19
10
31
1.86
11397--11481
22
3.9
22
92
0
134
35
17
14
32
1.90
11582--11640
31
1.9
31
89
6
93
47
1
16
33
1.57
11923--11962
20
2.0
20
85
5
53
22
32
17
27
1.96
28959--29200
107
2.3
104
85
8
339
40
9
9
40
1.70
29005--29225
108
2.0
108
78
8
227
45
9
9
35
1.69
34925--34994
29
2.4
29
85
2
86
41
28
10
20
1.84

Tables:   1

The End!