genome.fa.s11808.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011808.1 Corchorus capsularis cultivar CVL-1 contig11829, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85421

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1059--1176	60	2.0	60	88	3	175	35	16	15	32	1.90
2649--2679	6	5.2	6	96	0	53	61	0	0	38	0.96
16592--16887	109	2.7	109	90	4	432	50	2	10	37	1.49
22017--22073	29	2.0	28	86	3	78	29	24	1	43	1.64
22464--22585	53	2.3	54	78	5	124	36	11	16	36	1.85
23880--24073	98	2.0	98	97	0	370	45	9	15	28	1.78
24621--24645	11	2.3	11	100	0	50	88	0	12	0	0.53
31464--31789	167	1.9	168	86	6	462	41	12	16	29	1.85
36278--36303	2	13.0	2	100	0	52	50	0	0	50	1.00
38061--38085	13	1.9	13	100	0	50	68	0	0	32	0.90
40287--40330	23	1.9	23	90	0	70	45	2	15	36	1.59
42767--43018	22	11.8	22	69	14	136	34	16	14	34	1.89
43395--43689	22	13.5	22	80	5	267	31	18	10	39	1.85
43991--44270	22	12.8	22	80	5	273	32	18	10	39	1.84
43203--44363	581	2.0	581	99	0	2304	29	17	14	39	1.88
55042--55101	29	2.1	29	90	0	93	41	13	23	21	1.88
72623--72660	20	1.9	20	94	0	67	13	39	15	31	1.86
79470--82448	31	106.1	27	77	14	1999	29	15	20	34	1.93
79529--79607	16	4.9	16	65	11	54	31	15	20	32	1.93
79475--80217	27	25.9	29	84	9	760	30	15	19	34	1.93
79780--79829	16	3.2	16	72	16	59	34	16	18	32	1.92
80239--80319	16	5.2	16	68	11	69	33	16	13	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80148--81046	83	10.8	75	76	17	331	30	14	20	34	1.93
80239--80315	15	4.9	16	67	12	61	33	15	14	36	1.88
79470--82619	391	7.9	386	81	12	2790	29	14	20	34	1.93
81328--81378	16	3.2	16	73	15	61	37	15	13	33	1.87
81812--82031	25	8.2	25	79	8	179	28	14	20	36	1.92
82178--82448	25	10.0	25	80	9	218	28	14	21	36	1.92
82178--82448	77	3.3	77	82	8	263	28	14	21	36	1.92
81609--82448	27	30.0	27	79	12	701	27	14	21	36	1.93
82474--82614	31	4.7	31	88	5	186	30	11	19	38	1.87
82379--82564	99	1.9	99	87	2	275	29	13	20	36	1.91
82518--82568	16	3.2	16	68	15	52	35	13	13	37	1.85
83593--85421	332	5.5	332	83	3	2091	35	16	15	32	1.90
83588--85354	667	2.6	662	84	3	2217	35	15	15	32	1.90

Tables:   1

The End!