Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011811.1 Corchorus capsularis cultivar CVL-1 contig11832, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 31594
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:17317 original size:59 final size:60

Alignment explanation


    Indices: 17235--17352  Score: 202
    Period size: 59  Copynumber: 2.0  Consensus size: 60

      17225 TATAAATTAT

                                                                        
      17235 ACTACTAAATTTATCTGAAGGTAAGAATAT-AAATATGGCAAGGGATAAAAAATTATGAA
          1 ACTACTAAATTTATCTGAAGGTAAGAATATAAAATATGGCAAGGGATAAAAAATTATGAA

                                                  *            *       
      17294 ACTACTAAATTTATCTGAAGGTAAGAATATAAAAATATTGCAAGGGATAAAGAATTATG
          1 ACTACTAAATTTATCTGAAGGTAAGAATAT-AAAATATGGCAAGGGATAAAAAATTATG

      17353 GTTGTATTGG


Statistics
Matches: 55,  Mismatches: 2, Indels: 2
        0.93            0.03        0.03

Matches are distributed among these distances:
  59   30  0.55
  61   25  0.45

ACGTcount: A:0.48, C:0.07, G:0.17, T:0.28


Consensus pattern (60 bp):   
ACTACTAAATTTATCTGAAGGTAAGAATATAAAATATGGCAAGGGATAAAAAATTATGAA
Done.