Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011817.1 Corchorus capsularis cultivar CVL-1 contig11838, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88583

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
182--335
81
1.9
81
95
0
281
34
17
3
44
1.67
1140--1190
25
2.0
25
85
11
68
52
1
7
37
1.42
1907--1939
2
16.0
2
93
6
57
48
0
3
48
1.17
2430--2696
142
1.9
141
85
8
375
26
22
18
32
1.97
6032--6198
83
2.0
83
100
0
334
35
15
20
28
1.93
25078--25169
45
2.0
45
100
0
184
30
14
21
33
1.93
25344--25450
56
1.9
56
96
0
196
32
18
11
37
1.86
33891--33923
2
16.5
2
100
0
66
51
0
0
48
1.00
35492--35516
9
2.8
9
100
0
50
48
0
0
52
1.00
37755--37787
2
17.5
2
87
12
52
51
0
0
48
1.00
55450--55480
16
2.0
16
93
6
55
0
22
0
77
0.77
60245--60304
30
2.1
27
80
17
68
55
8
5
31
1.51
60727--60770
21
2.2
20
91
4
70
77
0
15
6
0.97
63085--63109
11
2.3
11
100
0
50
84
0
16
0
0.63
63325--63377
3
17.7
3
88
0
52
9
1
66
22
1.31
70604--70630
2
13.5
2
100
0
54
51
0
0
48
1.00
70765--70789
13
1.9
13
100
0
50
56
0
0
44
0.99
71008--71042
2
17.5
2
100
0
70
51
0
0
48
1.00
78160--78249
45
2.0
45
93
0
153
50
16
8
24
1.74
80016--80085
30
2.3
30
90
7
106
8
28
8
54
1.60
81779--81812
17
2.0
17
100
0
68
23
0
29
47
1.52
81806--81864
29
2.0
29
100
0
118
27
6
35
30
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82084--82147
31
2.1
31
96
0
119
31
26
4
37
1.77
83045--83255
105
2.0
105
100
0
422
38
23
18
19
1.93
85130--85159
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!