Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011818.1 Corchorus capsularis cultivar CVL-1 contig11839, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55548

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
156--199
2
23.0
2
90
9
74
52
0
0
47
1.00
1220--1293
28
2.5
29
93
6
123
44
24
12
18
1.84
3894--3932
16
2.5
15
88
8
60
38
0
5
56
1.22
4323--4387
30
2.2
30
100
0
130
33
12
33
20
1.89
14246--14321
29
2.6
29
85
6
100
43
13
21
22
1.86
25414--25499
43
2.0
43
90
0
136
38
17
17
26
1.92
33577--33611
18
1.9
18
88
0
52
25
0
20
54
1.45
39033--39060
2
14.0
2
100
0
56
50
0
0
50
1.00
50523--50680
81
2.0
80
97
2
300
36
10
13
39
1.78
50803--50833
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!