Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011823.1 Corchorus capsularis cultivar CVL-1 contig11844, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97493

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
767--810
18
2.3
19
84
11
54
45
9
2
43
1.48
10055--10092
19
2.0
19
90
10
60
31
15
10
42
1.81
15464--15489
12
2.2
12
100
0
52
50
0
34
15
1.45
15819--15865
2
24.0
2
87
12
71
48
0
2
48
1.13
16808--16835
2
14.0
2
100
0
56
50
0
0
50
1.00
22720--22789
29
2.4
29
85
2
86
38
28
12
20
1.89
28392--28471
42
1.9
42
97
0
151
22
33
27
16
1.95
29963--30030
27
2.5
28
79
11
70
27
11
22
38
1.89
42404--42431
1
28.0
1
100
0
56
100
0
0
0
0.00
53463--53490
2
14.0
2
100
0
56
50
0
0
50
1.00
54174--54201
2
14.0
2
100
0
56
50
0
0
50
1.00
67332--67382
25
2.0
26
84
3
68
3
17
0
78
0.90
68011--68104
39
2.4
39
89
5
138
28
12
56
2
1.48
68443--68474
3
11.0
3
93
6
57
68
0
0
31
0.90
83350--83512
88
1.8
89
97
1
310
21
16
13
48
1.80
83547--83588
18
2.4
17
84
11
50
59
2
2
35
1.23
85303--85345
22
2.0
22
95
0
77
27
11
30
30
1.92
85364--85400
13
2.8
13
87
0
56
32
8
43
16
1.77
89298--89368
37
1.9
37
94
0
124
36
16
8
38
1.80
94396--94440
23
1.9
23
81
4
54
48
13
8
28
1.72
97450--97493
2
22.0
2
95
0
79
50
2
0
47
1.13

Tables:   1

The End!