Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011824.1 Corchorus capsularis cultivar CVL-1 contig11845, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14170
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:886 original size:13 final size:13

Alignment explanation


    Indices: 868--893  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        858 TCTTTTCTTT

                         
        868 AATTGATAAACGA
          1 AATTGATAAACGA

                         
        881 AATTGATAAACGA
          1 AATTGATAAACGA

        894 GTTGTGATTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23


Consensus pattern (13 bp):   
AATTGATAAACGA

Found at i:13258 original size:22 final size:22

Alignment explanation


    Indices: 13217--13258  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

      13207 GACAAACCCG

                          **      
      13217 TAACCCGAATAATCTGAGAAGT
          1 TAACCCGAATAATCCAAGAAGT

                      *         
      13239 TAACCCGAATGATCCAAGAA
          1 TAACCCGAATAATCCAAGAA

      13259 TATTATAAAT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   17  1.00

ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19


Consensus pattern (22 bp):   
TAACCCGAATAATCCAAGAAGT

Found at i:13995 original size:11 final size:11

Alignment explanation


    Indices: 13981--14018  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

      13971 ATTCATAACA

                       
      13981 AATTTATAATT
          1 AATTTATAATT

                       
      13992 AATTTATAATT
          1 AATTTATAATT

                        
      14003 -ATTTGATAATT
          1 AATTT-ATAATT

            *    
      14014 TATTT
          1 AATTT

      14019 TATATAGGAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  10    4  0.16
  11   17  0.68
  12    4  0.16

ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58


Consensus pattern (11 bp):   
AATTTATAATT
Done.