Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011825.1 Corchorus capsularis cultivar CVL-1 contig11846, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53413

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18--51
2
17.0
2
100
0
68
50
0
0
50
1.00
13984--14020
10
3.5
10
86
13
56
54
0
45
0
1.00
13991--14020
12
2.5
12
94
0
51
53
0
46
0
1.00
18189--18309
59
2.1
59
93
1
208
35
11
21
31
1.89
36434--36467
17
2.0
17
94
0
59
23
17
20
38
1.93
37292--37373
31
2.6
32
80
9
87
12
39
35
13
1.82
37262--37373
33
3.5
31
78
7
100
13
37
34
14
1.85
37452--37575
34
3.8
33
78
4
135
14
34
34
16
1.89
41325--41364
21
1.9
21
90
10
64
22
27
15
35
1.94
42090--42114
13
1.9
13
100
0
50
60
0
0
40
0.97
47219--47243
12
2.1
12
100
0
50
24
0
0
76
0.80

Tables:   1

The End!