Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011826.1 Corchorus capsularis cultivar CVL-1 contig11847, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56316

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
195--484
109
2.6
109
91
4
451
50
1
10
37
1.47
4645--4702
29
2.0
29
96
0
107
48
32
6
12
1.67
6141--6175
18
1.9
18
88
0
52
25
14
34
25
1.94
11602--11669
36
1.9
35
90
3
109
42
17
20
19
1.89
12536--12912
188
2.0
188
98
0
727
37
18
15
28
1.91
21741--21786
23
2.0
23
100
0
92
17
13
26
43
1.85
23923--23948
13
2.0
13
100
0
52
30
15
15
38
1.88
30820--30864
22
2.1
21
84
8
56
37
37
13
11
1.80
39740--39764
6
4.2
6
100
0
50
16
0
32
52
1.44
43589--43623
18
1.9
18
94
0
61
22
0
28
48
1.51
47935--47981
24
2.0
24
82
0
58
25
8
21
44
1.80
54050--54087
19
2.0
19
100
0
76
5
36
36
21
1.76
51081--56312
334
15.5
334
77
10
3975
31
15
17
35
1.91
53467--56312
664
4.3
664
85
5
3622
32
14
17
35
1.90

Tables:   1

The End!