Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011827.1 Corchorus capsularis cultivar CVL-1 contig11848, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37871

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104--709
302
2.0
305
90
2
952
33
13
16
36
1.88
409--2296
333
5.7
333
89
2
2873
30
16
17
34
1.92
410--4120
667
5.6
664
87
4
4767
30
16
17
34
1.93
2299--4121
334
5.5
332
86
2
2383
30
16
17
34
1.93
2299--4121
668
2.7
661
88
2
2632
30
16
17
34
1.93
3953--4292
170
2.0
169
88
1
502
25
20
17
36
1.94
3619--4613
499
2.0
499
88
3
1475
29
17
17
35
1.93
4120--5415
329
3.9
328
85
4
1730
30
15
17
36
1.91
10703--10736
16
2.1
16
94
0
59
20
14
26
38
1.91
14429--14496
6
11.8
6
86
9
79
33
35
11
19
1.88
14415--14472
27
2.1
27
77
0
53
32
39
10
17
1.83
14415--14495
33
2.5
33
87
0
108
33
37
11
18
1.86
14435--14489
27
2.0
27
85
0
74
34
36
10
18
1.86
18239--18283
23
2.0
23
86
0
63
24
26
15
33
1.95
21017--21045
9
3.2
9
100
0
58
20
10
48
20
1.79
25458--25482
2
12.5
2
100
0
50
52
0
0
48
1.00
26439--26470
15
2.1
15
100
0
64
50
12
6
31
1.65
27512--27541
2
15.0
2
100
0
60
50
50
0
0
1.00
28589--28625
6
6.2
6
93
0
56
21
0
32
45
1.52
34291--34319
3
9.7
3
100
0
58
65
0
0
34
0.93
35770--35804
2
17.5
2
100
0
70
51
0
0
48
1.00

Tables:   1

The End!