genome.fa.s11831.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011831.1 Corchorus capsularis cultivar CVL-1 contig11852, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35689

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129--888	322	2.4	321	80	7	848	38	15	12	33	1.86
148--934	321	2.4	319	79	8	819	37	16	13	33	1.88
921--953	15	2.2	15	100	0	66	42	12	18	27	1.85
2156--2525	51	6.2	61	78	19	399	36	24	31	7	1.83
2223--2357	71	1.9	71	95	0	243	37	25	29	6	1.82
2498--2538	20	2.0	20	95	0	73	48	24	26	0	1.51
2160--2587	183	2.3	182	81	5	490	36	24	32	7	1.83
2447--2587	69	2.0	71	90	5	223	37	24	32	5	1.79
2518--2636	47	2.4	48	75	20	120	37	24	31	5	1.79
2533--2634	47	2.1	47	83	5	134	37	23	32	6	1.81
2577--2699	61	2.1	59	92	3	201	37	25	30	6	1.81
2791--2821	2	16.0	2	93	6	55	48	0	51	0	1.00
2791--2819	15	1.9	15	100	0	58	48	0	51	0	1.00
2806--3228	213	2.0	209	91	3	688	47	21	20	10	1.79
8633--8683	25	2.0	25	96	0	93	43	25	5	25	1.77
16706--16747	6	7.0	6	97	0	75	47	33	19	0	1.49
25839--25882	23	1.9	23	95	0	79	38	4	6	50	1.50
26172--26202	14	2.1	15	94	5	55	61	0	0	38	0.96
26170--26205	15	2.4	16	86	13	58	58	0	0	41	0.98
27711--27755	22	2.0	22	86	0	63	24	11	4	60	1.49
27914--27965	24	2.2	24	96	0	95	40	15	21	23	1.91
33680--33709	15	2.0	15	93	0	51	23	6	30	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33391--33877	245	2.0	245	97	0	920	26	10	20	42	1.83

Tables:   1

The End!