Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011834.1 Corchorus capsularis cultivar CVL-1 contig11855, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13422
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Found at i:49 original size:16 final size:16
Alignment explanation
Indices: 4--72 Score: 51
Period size: 12 Copynumber: 4.4 Consensus size: 16
1 TTT
4 TTTTTC-TT-CTTTTC
1 TTTTTCTTTCCTTTTC
*
18 TTTTTC---CCTCTT-
1 TTTTTCTTTCCTTTTC
30 TTTTTCTTTCCTTTTC
1 TTTTTCTTTCCTTTTC
46 TTTTTCCTTCTCCTTCTTC
1 TTTTT-CTT-TCCTT-TTC
65 ATTTTTCT
1 -TTTTTCT
73 GTCTTCAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
12 6 0.14
13 4 0.09
14 6 0.14
15 5 0.11
16 5 0.11
17 3 0.07
18 5 0.11
19 5 0.11
20 5 0.11
ACGTcount: A:0.01, C:0.28, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTCTTTCCTTTTC
Found at i:4947 original size:22 final size:22
Alignment explanation
Indices: 4864--5286 Score: 209
Period size: 22 Copynumber: 19.0 Consensus size: 22
4854 TTTGTTATGT
* *
4864 GTGTGGTTATCAATATTTCATA
1 GTGTAGTTATCAAAATTTCATA
* *
4886 ATG-AGATTATCACAATTTCATA
1 GTGTAG-TTATCAAAATTTCATA
* ** *
4908 ATACAATTAATCAAAATTTCATA
1 GTGTAGTT-ATCAAAATTTCATA
* * *
4931 GTGTTGTTACCAAAATTTGATA
1 GTGTAGTTATCAAAATTTCATA
* * *
4953 G-GGAGCTTATCAAAATTTTAAA
1 GTGTAG-TTATCAAAATTTCATA
* *
4975 TTGTGGTTATCAAAATTTCATA
1 GTGTAGTTATCAAAATTTCATA
* *
4997 GAG-AGGTTATCAAAATTTTATA
1 GTGTA-GTTATCAAAATTTCATA
* * *
5019 GCG-AGTTTATTAAACTTTCATA
1 GTGTAG-TTATCAAAATTTCATA
* *
5041 GTGTAATCATCAAAATTTCATA
1 GTGTAGTTATCAAAATTTCATA
** *
5063 AAGTAGTTAGCAAAATTTCATA
1 GTGTAGTTATCAAAATTTCATA
* * *
5085 GAGT-GATTATCAGAATTTTATA
1 GTGTAG-TTATCAAAATTTCATA
* *
5107 GGGATCATGTTATTAAAATTTCATA
1 GTG-T-A-GTTATCAAAATTTCATA
* * * *
5132 TATAGGAAGATTATCAAAATTTTATT
1 -GT--GTAG-TTATCAAAATTTCATA
* * *
5158 GTGTGGTTATTAAAATTTAATA
1 GTGTAGTTATCAAAATTTCATA
* *
5180 GTGAAGTCATCAAAATTTCATA
1 GTGTAGTTATCAAAATTTCATA
* *
5202 GCG-AGGTTATCAGAATTTCATA
1 GTGTA-GTTATCAAAATTTCATA
* *
5224 -AG--GTTATCAAAATTTTATA
1 GTGTAGTTATCAAAATTTCATA
*
5243 GCG-AGATTATCAAAATTTCATA
1 GTGTAG-TTATCAAAATTTCATA
* *
5265 ATAGTGGTTATCAAAATTTCAT
1 GT-GTAGTTATCAAAATTTCAT
5287 GAGAATGTTA
Statistics
Matches: 300, Mismatches: 78, Indels: 45
0.71 0.18 0.11
Matches are distributed among these distances:
19 15 0.05
20 1 0.00
21 8 0.03
22 205 0.68
23 39 0.13
24 1 0.00
25 15 0.05
26 15 0.05
28 1 0.00
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (22 bp):
GTGTAGTTATCAAAATTTCATA
Found at i:5011 original size:66 final size:65
Alignment explanation
Indices: 4917--5517 Score: 220
Period size: 66 Copynumber: 9.2 Consensus size: 65
4907 AATACAATTA
* ** * * * *
4917 ATCAAAATTTCATAGTGTTGTTACCAAAATTTGATAGGGAGCTTATCAAAATTTTAAATTGTGGT
1 ATCAAAATTTCATAGAGAGGTTATCAAAATTTCATA-GGAGGTTATCAAAATTTTAAATCGTGGT
4982 T
65 T
* * * * * * **
4983 ATCAAAATTTCATAGAGAGGTTATCAAAATTTTATAGCGAGTTTATTAAACTTTCATAGT-GTAA
1 ATCAAAATTTCATAGAGAGGTTATCAAAATTTCATAG-GAGGTTATCAAAATTTTA-AATCGTGG
*
5047 TC
64 TT
* * *
5049 ATCAAAATTTCATAAAGTA-GTTAGCAAAATTTCATA-GAGTGATTATCAGAATTTTATAGGGAT
1 ATCAAAATTTCATAGAG-AGGTTATCAAAATTTCATAGGAG-G-TTATCAAAATTTTA-A---AT
*
5112 CAT-GTT
59 CGTGGTT
* * * * * * * *
5118 ATTAAAATTTCATATATAGGAAGATTATCAAAATTTTATTGTGTGGTTATTAAAA-TTT-AATAG
1 ATCAAAATTTC--ATAGA-G-AGGTTATCAAAATTTCATAG-GAGGTTATCAAAATTTTAAATCG
*
5181 TGAAGTC
61 TG--GTT
* * * * * *
5188 ATCAAAATTTCATAGCGAGGTTATCAGAATTTCATA--AGGTTATCAAAATTTTATAGCGAGATT
1 ATCAAAATTTCATAGAGAGGTTATCAAAATTTCATAGGAGGTTATCAAAATTTTAAATCGTGGTT
* * * * * * * * *
5251 ATCAAAATTTCATAATAGTGGTTATCAAAATTTCATGAGAATGTTATTAGAATTTCATAA-GGAG
1 ATCAAAATTTCAT-AGAGAGGTTATCAAAATTTCAT-AGGAGGTTATCAAAATTTTA-AATCGTG
5315 GTT
63 GTT
* * * * * * * * * *
5318 GTCAAATTATTTCATAGTGTGCTTACCAAAA-TTCCTAGGAAGGTTATAAAAATTTTTATTGAGT
1 ATCAAA--ATTTCATAGAGAGGTTATCAAAATTTCATAGG-AGGTTATCAAAATTTTAAAT-CGT
5382 GGTT
62 GGTT
* ** * *
5386 ATCAAAATTTCATATGA-AGGTT-T----A--TCA-AGTGTGGTTATCAAAATTTTTTAGCGAGG
1 ATCAAAATTTCATA-GAGAGGTTATCAAAATTTCATAG-GAGGTTATCAAAATTTTAAATCGTGG
5442 TT
64 TT
* * * * *
5444 ATCAAAATTTCATAGTGCGGTTATCAAAATTTCATAAGG-GG-TATCAAAATTTCATAGT-GAGG
1 ATCAAAATTTCATAGAGAGGTTATCAAAATTTCAT-AGGAGGTTATCAAAATTTTA-AATCGTGG
5506 TT
64 TT
5508 ATCAAAATTT
1 ATCAAAATTT
5518 TTCATAGGGA
Statistics
Matches: 393, Mismatches: 99, Indels: 88
0.68 0.17 0.15
Matches are distributed among these distances:
57 1 0.00
58 23 0.06
59 18 0.05
60 3 0.01
61 1 0.00
63 25 0.06
64 51 0.13
65 10 0.03
66 121 0.31
67 49 0.12
68 26 0.07
69 19 0.05
70 14 0.04
71 4 0.01
72 5 0.01
73 20 0.05
74 1 0.00
75 2 0.01
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (65 bp):
ATCAAAATTTCATAGAGAGGTTATCAAAATTTCATAGGAGGTTATCAAAATTTTAAATCGTGGTT
Found at i:5038 original size:44 final size:44
Alignment explanation
Indices: 4917--5517 Score: 270
Period size: 44 Copynumber: 13.7 Consensus size: 44
4907 AATACAATTA
* * ** * * * *
4917 ATCAAAATTTCATAGTGTTGTTACCAAAATTTGATAGGGAGCTT
1 ATCAAAATTTTATAGCGAGGTTATCAAAATTTCATAGAGAGGTT
* ** *
4961 ATCAAAATTTTAAATTGTGGTTATCAAAATTTCATAGAGAGGTT
1 ATCAAAATTTTATAGCGAGGTTATCAAAATTTCATAGAGAGGTT
* * * * * *
5005 ATCAAAATTTTATAGCGAGTTTATTAAACTTTCATAGTGTA-ATC
1 ATCAAAATTTTATAGCGAGGTTATCAAAATTTCATAGAG-AGGTT
* ** * * *
5049 ATCAAAATTTCATAAAGTA-GTTAGCAAAATTTCATAGAGTGATT
1 ATCAAAATTTTATAGCG-AGGTTATCAAAATTTCATAGAGAGGTT
* * * * * *
5093 ATCAGAATTTTATAGGGATCATGTTATTAAAATTTCATATATAGGAAGATT
1 ATCAAAATTTTATAGCG---AGGTTATCAAAATTTC--ATAGA-G-AGGTT
* * * * * * * *
5144 ATCAAAATTTTATTGTGTGGTTATTAAAATTTAATAGTGAAGTC
1 ATCAAAATTTTATAGCGAGGTTATCAAAATTTCATAGAGAGGTT
* *
5188 ATCAAAATTTCATAGCGAGGTTATCAGAATTTCAT--A-AGGTT
1 ATCAAAATTTTATAGCGAGGTTATCAAAATTTCATAGAGAGGTT
* * *
5229 ATCAAAATTTTATAGCGAGATTATCAAAATTTCATAATAGTGGTT
1 ATCAAAATTTTATAGCGAGGTTATCAAAATTTCAT-AGAGAGGTT
* * * * *
5274 ATCAAAATTTCATGAG-AATGTTATTAGAATTTCATA-AGGAGGTT
1 ATCAAAATTTTAT-AGCGAGGTTATCAAAATTTCATAGA-GAGGTT
* * * * * * *
5318 GTCAAATTATTTCATAGTGTGCTTACCAAAA-TTCCTAG-GAAGGTT
1 ATCAAA--ATTTTATAGCGAGGTTATCAAAATTTCATAGAG-AGGTT
* * * *
5363 ATAAAAATTTTTATTGAGTGGTTATCAAAATTTCATATGA-AGGTT
1 ATCAAAA-TTTTATAGCGAGGTTATCAAAATTTCATA-GAGAGGTT
* * * ** *
5408 -T----A--TCA-AGTGTGGTTATCAAAATTTTTTAGCGAGGTT
1 ATCAAAATTTTATAGCGAGGTTATCAAAATTTCATAGAGAGGTT
* * * *
5444 ATCAAAATTTCATAGTGCGGTTATCAAAATTTCATA-AG-GGGT
1 ATCAAAATTTTATAGCGAGGTTATCAAAATTTCATAGAGAGGTT
* *
5486 ATCAAAATTTCATAGTGAGGTTATCAAAATTT
1 ATCAAAATTTTATAGCGAGGTTATCAAAATTT
5518 TTCATAGGGA
Statistics
Matches: 425, Mismatches: 98, Indels: 70
0.72 0.17 0.12
Matches are distributed among these distances:
35 1 0.00
36 24 0.06
37 3 0.01
40 1 0.00
41 36 0.08
42 34 0.08
43 6 0.01
44 193 0.45
45 59 0.14
46 20 0.05
47 12 0.03
48 13 0.03
49 4 0.01
50 1 0.00
51 18 0.04
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (44 bp):
ATCAAAATTTTATAGCGAGGTTATCAAAATTTCATAGAGAGGTT
Found at i:5245 original size:41 final size:41
Alignment explanation
Indices: 5188--5312 Score: 144
Period size: 41 Copynumber: 3.0 Consensus size: 41
5178 TAGTGAAGTC
5188 ATCAAAATTTCATAGCGAGGTTATCAGAATTTCATAAGGTT
1 ATCAAAATTTCATAGCGAGGTTATCAGAATTTCATAAGGTT
* * *
5229 ATCAAAATTTTATAGCGAGATTATCAAAATTTCATAATAGTGGTT
1 ATCAAAATTTCATAGCGAGGTTATCAGAATTTCAT-A-A--GGTT
* * *
5274 ATCAAAATTTCATGAG-AATGTTATTAGAATTTCATAAGG
1 ATCAAAATTTCAT-AGCGAGGTTATCAGAATTTCATAAGG
5313 AGGTTGTCAA
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
41 34 0.49
42 1 0.01
43 2 0.03
44 1 0.01
45 30 0.43
46 2 0.03
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (41 bp):
ATCAAAATTTCATAGCGAGGTTATCAGAATTTCATAAGGTT
Found at i:5490 original size:20 final size:22
Alignment explanation
Indices: 5413--5517 Score: 135
Period size: 22 Copynumber: 4.9 Consensus size: 22
5403 AGGTTTATCA
* **
5413 AGTGTGGTTATCAAAATTTTTT
1 AGTGAGGTTATCAAAATTTCAT
*
5435 AGCGAGGTTATCAAAATTTCAT
1 AGTGAGGTTATCAAAATTTCAT
*
5457 AGTGCGGTTATCAAAATTTCAT
1 AGTGAGGTTATCAAAATTTCAT
5479 AAG-G-GG-TATCAAAATTTCAT
1 -AGTGAGGTTATCAAAATTTCAT
5499 AGTGAGGTTATCAAAATTT
1 AGTGAGGTTATCAAAATTT
5518 TTCATAGGGA
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
19 2 0.03
20 15 0.21
21 4 0.05
22 50 0.68
23 2 0.03
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (22 bp):
AGTGAGGTTATCAAAATTTCAT
Found at i:5832 original size:23 final size:22
Alignment explanation
Indices: 5803--5856 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
5793 GGTCCTTACC
* *
5803 AAATTTCATTGTGGGGGTAATCA
1 AAATTTCATAGTGAGGGTAA-CA
*
5826 AAATTTCATAGTGAGGTTAACA
1 AAATTTCATAGTGAGGGTAACA
5848 AAATTTCAT
1 AAATTTCAT
5857 GAGGTCATCG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 11 0.39
23 17 0.61
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (22 bp):
AAATTTCATAGTGAGGGTAACA
Found at i:5852 original size:22 final size:22
Alignment explanation
Indices: 5664--5856 Score: 83
Period size: 22 Copynumber: 8.9 Consensus size: 22
5654 ATGTTAGATG
*
5664 GAGGTTATCAAAATTTCATAGT
1 GAGGTTAACAAAATTTCATAGT
* * *
5686 GTA-TTTACCAAAATTTCATTGT
1 G-AGGTTAACAAAATTTCATAGT
*
5708 G-GGGTAATCAAAATTTCATAGT
1 GAGGTTAA-CAAAATTTCATAGT
* * *
5730 TAGGTAAACAAAATTTTATAGT
1 GAGGTTAACAAAATTTCATAGT
* **** * **
5752 GTGG-T-ATTTTATCTT-GTAAA
1 GAGGTTAACAAAAT-TTCATAGT
* *
5772 GAGGTTATCAAAATTTCATAGG
1 GAGGTTAACAAAATTTCATAGT
*** * *
5794 GTCCTT-ACCAAATTTCATTGT
1 GAGGTTAACAAAATTTCATAGT
* *
5815 GGGGGTAATCAAAATTTCATAGT
1 GAGGTTAA-CAAAATTTCATAGT
5838 GAGGTTAACAAAATTTCAT
1 GAGGTTAACAAAATTTCAT
5857 GAGGTCATCG
Statistics
Matches: 116, Mismatches: 45, Indels: 20
0.64 0.25 0.11
Matches are distributed among these distances:
20 8 0.07
21 20 0.17
22 65 0.56
23 23 0.20
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (22 bp):
GAGGTTAACAAAATTTCATAGT
Found at i:5944 original size:22 final size:23
Alignment explanation
Indices: 5918--5977 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
5908 TGTATATCAA
*
5918 AATTTCATAGGGAGGTAG-ACAT
1 AATTTCATAGGGAGGTAGTAAAT
*
5940 AATTTCATAAGGAGGTTAGTAAAT
1 AATTTCATAGGGAGG-TAGTAAAT
5964 AA--TCATAGGGAGGT
1 AATTTCATAGGGAGGT
5978 TGTCAAAGTC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
21 1 0.03
22 24 0.73
23 3 0.09
24 5 0.15
ACGTcount: A:0.38, C:0.07, G:0.27, T:0.28
Consensus pattern (23 bp):
AATTTCATAGGGAGGTAGTAAAT
Found at i:6163 original size:23 final size:22
Alignment explanation
Indices: 6068--6351 Score: 155
Period size: 22 Copynumber: 12.9 Consensus size: 22
6058 AGATTATCAA
*
6068 AGGTTATCAAAATTTCACA-TG
1 AGGTTATCAAAATTTCATAGTG
*
6089 ATGGTTAACAAAATTTCATGAG-G
1 A-GGTTATCAAAATTTCAT-AGTG
* *
6112 AGCTTATTAAAATTTCATA-TG
1 AGGTTATCAAAATTTCATAGTG
* *
6133 AGGATTATCAAAATTTTATAGGG
1 AGG-TTATCAAAATTTCATAGTG
6156 AGGTTTATCAAAATTTCATAGTG
1 AGG-TTATCAAAATTTCATAGTG
**
6179 TCGTTATCAAAATTTCATCA-TG
1 AGGTTATCAAAATTTCAT-AGTG
* * * * * **
6201 TGCTTACCAACATTCCATAGAA
1 AGGTTATCAAAATTTCATAGTG
**
6223 AGGTTATCAAAATTTCATAAAG
1 AGGTTATCAAAATTTCATAGTG
* * * *
6245 AGGCTATAAAAATTTCGTGGTG
1 AGGTTATCAAAATTTCATAGTG
** * * * **
6267 TCGTCATCAAAATTCCGTAAAG
1 AGGTTATCAAAATTTCATAGTG
* * * *
6289 TGCTTCTTAAAATTTCATCAG-G
1 AGGTTATCAAAATTTCAT-AGTG
* *
6311 AGGTTACCAAAATTTCATAATG
1 AGGTTATCAAAATTTCATAGTG
* *
6333 AGGTTTTCAAAATTCCATA
1 AGGTTATCAAAATTTCATA
6352 AGGATGATAA
Statistics
Matches: 193, Mismatches: 60, Indels: 19
0.71 0.22 0.07
Matches are distributed among these distances:
21 7 0.04
22 159 0.82
23 27 0.14
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.35
Consensus pattern (22 bp):
AGGTTATCAAAATTTCATAGTG
Found at i:6315 original size:88 final size:88
Alignment explanation
Indices: 6113--6336 Score: 218
Period size: 88 Copynumber: 2.5 Consensus size: 88
6103 TTCATGAGGA
* * * ** * *
6113 GCTTATTAAAATTTCATATGAGGATTATCAAAATTTTATAGGGAGGTTTATCAAAATTTCATAGT
1 GCTTCTTAAAATTTCATAGGAGG-TTATCAAAATTTCATAAAGAGGTCTATAAAAATTTCATAGT
* * * *
6178 GTCGTTATCAAAATTTCATCATGT
65 GTCGTCATCAAAATTCCATAAAGT
* * * * * *
6202 GCTTAC-CAACATTCCATAGAAAGGTTATCAAAATTTCATAAAGAGG-CTATAAAAATTTCGTGG
1 GCTT-CTTAAAATTTCATAG-GAGGTTATCAAAATTTCATAAAGAGGTCTATAAAAATTTCATAG
*
6265 TGTCGTCATCAAAATTCCGTAAAGT
64 TGTCGTCATCAAAATTCCATAAAGT
* *
6290 GCTTCTTAAAATTTCATCAGGAGGTTACCAAAATTTCATAATGAGGT
1 GCTTCTTAAAATTTCAT-AGGAGGTTATCAAAATTTCATAAAGAGGT
6337 TTTCAAAATT
Statistics
Matches: 106, Mismatches: 24, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
87 1 0.01
88 68 0.64
89 34 0.32
90 3 0.03
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.35
Consensus pattern (88 bp):
GCTTCTTAAAATTTCATAGGAGGTTATCAAAATTTCATAAAGAGGTCTATAAAAATTTCATAGTG
TCGTCATCAAAATTCCATAAAGT
Found at i:6322 original size:22 final size:22
Alignment explanation
Indices: 6297--6372 Score: 80
Period size: 22 Copynumber: 3.5 Consensus size: 22
6287 AGTGCTTCTT
* *
6297 AAAATTTCATCAGGAGGTTACC
1 AAAATTTCATAAGGAGGTTAAC
* **
6319 AAAATTTCATAATGAGGTTTTC
1 AAAATTTCATAAGGAGGTTAAC
* * *
6341 AAAATTCCATAAGGATGATAAC
1 AAAATTTCATAAGGAGGTTAAC
6363 AAAATTTCAT
1 AAAATTTCAT
6373 GGGAAAATTA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (22 bp):
AAAATTTCATAAGGAGGTTAAC
Found at i:7128 original size:109 final size:106
Alignment explanation
Indices: 6936--7203 Score: 295
Period size: 109 Copynumber: 2.5 Consensus size: 106
6926 TCAAAATTTG
* * * * *
6936 AGATTTACCCTTTTAAAAAATGAAACAACTTTATAATTGGGGCTAAACCTTATTTAAGTGTTCAA
1 AGATTTACCC-TTAAAAAAATAAAACTA-TTTATAATTGGGGCAAAACCTTATTTAAATGTTCAA
* * ** **
7001 ATTTATTTTTCTAAAACCCTAAGATAGTGGATCTTACCATCTA
64 ACTTATTTTTCTAAAACCCTAAAATAAAGGATCTTAAAATCTA
* *
7044 AGATTTACCCTTGAAAAAATAAAACTTATTT-TAGTTGGGGCAAAACCTTATTTAAAAAATGTTC
1 AGATTTACCCTTAAAAAAATAAAAC-TATTTATAATTGGGGCAAAACCTTATTT---AAATGTTC
* *
7108 AAACTTATTTTTCTAAAACCCTAAAATAAAGGGTCTTAAAATGTA
62 AAACTTATTTTTCTAAAACCCTAAAATAAAGGATCTTAAAATCTA
* * * *
7153 AGATTTACCTTTAAAAAAATAAAACATATTTATAACTGGGACTAAACCTTA
1 AGATTTACCCTTAAAAAAATAAAAC-TATTTATAATTGGGGCAAAACCTTA
7204 ATTATTGTTA
Statistics
Matches: 134, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
106 20 0.15
107 16 0.12
108 11 0.08
109 72 0.54
110 15 0.11
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (106 bp):
AGATTTACCCTTAAAAAAATAAAACTATTTATAATTGGGGCAAAACCTTATTTAAATGTTCAAAC
TTATTTTTCTAAAACCCTAAAATAAAGGATCTTAAAATCTA
Done.