Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011837.1 Corchorus capsularis cultivar CVL-1 contig11858, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18412
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31


Found at i:12628 original size:13 final size:13

Alignment explanation


    Indices: 12610--12634  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

      12600 AGAGAAATTA

                         
      12610 CTTTTGGTAAGCT
          1 CTTTTGGTAAGCT

                        
      12623 CTTTTGGTAAGC
          1 CTTTTGGTAAGC

      12635 CAAATTGATC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44


Consensus pattern (13 bp):   
CTTTTGGTAAGCT

Found at i:18369 original size:12 final size:10

Alignment explanation


    Indices: 18341--18371  Score: 62
    Period size: 10  Copynumber: 3.1  Consensus size: 10

      18331 CAAAATTTTC

                      
      18341 AATTCTCTCA
          1 AATTCTCTCA

                      
      18351 AATTCTCTCA
          1 AATTCTCTCA

                      
      18361 AATTCTCTCA
          1 AATTCTCTCA

             
      18371 A
          1 A

      18372 CCTTCAAACT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   21  1.00

ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39


Consensus pattern (10 bp):   
AATTCTCTCA
Done.