Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011840.1 Corchorus capsularis cultivar CVL-1 contig11861, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78613

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--98
2
49.5
2
95
2
180
0
48
0
50
1.00
128--194
35
1.9
35
87
0
98
14
22
14
47
1.81
2082--2188
2
56.0
2
74
12
91
44
0
1
52
1.18
9263--9326
21
3.1
21
82
8
87
37
14
15
32
1.87
10283--10669
201
1.9
201
97
0
738
27
17
16
37
1.92
15376--15480
33
3.2
33
81
0
120
26
9
19
44
1.81
15429--15516
33
2.7
32
83
11
99
28
9
21
40
1.84
15506--15612
33
3.2
33
93
0
178
27
14
15
42
1.85
25558--25651
45
2.2
45
83
7
115
37
19
7
36
1.80
35487--35513
6
4.5
6
100
0
54
29
0
14
55
1.40
36328--37440
439
2.5
441
87
4
1555
41
17
13
27
1.87
37642--37675
2
17.0
2
100
0
68
50
0
0
50
1.00
38505--38567
12
5.0
13
84
5
85
25
20
14
39
1.90
38507--38570
25
2.6
25
97
0
119
28
20
14
37
1.91
38940--38988
24
2.0
24
96
0
89
36
20
2
40
1.64
39451--39653
109
1.9
107
92
2
343
32
13
16
37
1.88
41670--41727
28
2.0
30
90
6
93
29
15
18
36
1.92
42063--42087
13
1.9
13
100
0
50
40
4
16
40
1.67
46701--46749
14
3.5
14
80
8
55
61
0
8
30
1.25
54823--54856
17
2.1
16
88
5
50
50
5
32
11
1.63
56781--56837
29
2.0
29
89
0
87
29
3
12
54
1.54
57066--57224
82
1.9
82
86
5
223
30
23
17
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70706--70739
2
17.0
2
100
0
68
50
0
0
50
1.00
73743--73797
21
2.7
19
86
8
74
58
0
1
40
1.09
75858--75898
21
2.0
21
100
0
82
51
9
19
19
1.74
75888--76126
92
2.6
92
97
0
442
38
16
18
25
1.92
76489--76517
2
15.0
2
92
7
51
51
0
0
48
1.00
77097--77135
11
3.2
13
79
20
57
20
0
7
71
1.10
77358--77406
21
2.3
21
92
0
80
32
24
10
32
1.89
78281--78319
20
1.9
21
89
5
62
23
41
5
30
1.76
78406--78431
10
2.6
10
100
0
52
30
30
0
38
1.58
78379--78442
35
1.9
32
90
9
101
34
28
0
37
1.57
78468--78585
26
4.7
26
71
11
104
53
7
3
35
1.46
78468--78511
15
3.2
15
72
24
51
54
9
0
36
1.32

Tables:   1

The End!