Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011841.1 Corchorus capsularis cultivar CVL-1 contig11862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101085

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13840--13889
21
2.5
20
78
9
57
52
18
14
16
1.76
18254--18280
14
1.9
14
100
0
54
51
11
14
22
1.73
21081--21126
22
2.1
22
95
0
83
13
10
23
52
1.71
29834--29867
2
17.0
2
100
0
68
50
0
0
50
1.00
34442--34496
25
2.2
25
96
0
101
18
21
1
58
1.49
38580--38675
46
2.1
46
92
3
158
41
6
5
46
1.51
38710--38837
59
2.2
59
94
1
222
56
3
24
15
1.56
39074--39117
23
1.9
23
100
0
88
27
4
50
18
1.66
45620--45653
16
2.1
16
94
0
59
47
14
23
14
1.82
50929--50977
24
2.0
25
84
4
64
34
28
0
36
1.58
51226--51260
3
11.7
3
100
0
70
68
0
31
0
0.90
52379--52424
17
2.6
17
81
15
58
50
0
21
28
1.49
52376--52423
18
2.8
16
80
20
53
47
0
20
31
1.50
55908--55947
2
21.0
2
90
10
66
50
0
0
50
1.00
58039--58075
19
2.0
18
94
5
65
70
5
13
10
1.32
65714--65739
2
13.0
2
100
0
52
0
50
0
50
1.00
71479--71519
2
20.5
2
84
0
55
46
4
2
46
1.37
87651--87710
29
2.1
29
100
0
120
41
16
3
38
1.65
87655--87721
29
2.4
29
87
7
86
43
14
4
37
1.66
88644--88704
27
2.3
26
94
5
106
40
24
9
24
1.85
96834--96869
6
6.5
6
81
18
51
33
16
0
50
1.46
96834--96869
16
2.2
17
95
5
65
33
16
0
50
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96899--96963
30
2.1
31
88
2
96
30
16
3
49
1.61
97497--97588
38
2.5
37
79
10
105
16
21
8
53
1.70
98173--98450
22
12.5
23
75
8
177
40
9
15
34
1.80
98492--98554
22
2.8
23
78
7
67
34
12
14
38
1.84

Tables:   1

The End!