Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011842.1 Corchorus capsularis cultivar CVL-1 contig11863, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6428
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:2778 original size:13 final size:14

Alignment explanation


    Indices: 2757--2788  Score: 50
    Period size: 13  Copynumber: 2.4  Consensus size: 14

       2747 TTTCTTGATT

                          
       2757 GATTT-CTTAGTTA
          1 GATTTACTTAGTTA

                          
       2770 -ATTTACTTAGTTA
          1 GATTTACTTAGTTA

                  
       2783 GATTTA
          1 GATTTA

       2789 ATTTTAATTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 3
        0.85            0.00        0.15

Matches are distributed among these distances:
  12    4  0.24
  13    8  0.47
  14    5  0.29

ACGTcount: A:0.28, C:0.06, G:0.12, T:0.53


Consensus pattern (14 bp):   
GATTTACTTAGTTA
Done.