Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011844.1 Corchorus capsularis cultivar CVL-1 contig11865, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6442
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:3602 original size:20 final size:21

Alignment explanation


    Indices: 3574--3612  Score: 62
    Period size: 20  Copynumber: 1.9  Consensus size: 21

       3564 TTATAACTAT

                *                
       3574 TTTTCTATAC-TTTTTACCAC
          1 TTTTATATACATTTTTACCAC

                               
       3594 TTTTATATACATTTTTACC
          1 TTTTATATACATTTTTACC

       3613 TTATTTTCTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20    9  0.53
  21    8  0.47

ACGTcount: A:0.23, C:0.21, G:0.00, T:0.56


Consensus pattern (21 bp):   
TTTTATATACATTTTTACCAC

Found at i:5100 original size:13 final size:14

Alignment explanation


    Indices: 5079--5110  Score: 50
    Period size: 13  Copynumber: 2.4  Consensus size: 14

       5069 TTTCTTGATT

                          
       5079 GATTT-CTTAGTTA
          1 GATTTACTTAGTTA

                          
       5092 -ATTTACTTAGTTA
          1 GATTTACTTAGTTA

                  
       5105 GATTTA
          1 GATTTA

       5111 ATTTTAATTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 3
        0.85            0.00        0.15

Matches are distributed among these distances:
  12    4  0.24
  13    8  0.47
  14    5  0.29

ACGTcount: A:0.28, C:0.06, G:0.12, T:0.53


Consensus pattern (14 bp):   
GATTTACTTAGTTA
Done.