genome.fa.s11845.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011845.1 Corchorus capsularis cultivar CVL-1 contig11866, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64897

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1024--1194	22	8.3	21	77	11	151	22	19	5	51	1.68
1061--1140	35	2.2	35	88	4	124	21	21	5	52	1.65
1234--1291	15	3.5	15	71	24	53	17	25	1	55	1.52
1161--1291	36	3.7	36	85	10	169	16	25	3	54	1.59
1293--1354	26	2.4	26	83	2	81	25	17	6	50	1.70
1319--1401	32	2.5	33	83	13	116	24	19	3	53	1.61
1437--1536	40	2.4	41	85	9	150	24	18	5	53	1.64
7494--7535	20	2.1	21	86	8	61	28	7	7	57	1.52
9225--9484	102	2.5	105	84	6	341	40	10	8	40	1.70
10607--10653	20	2.3	21	79	13	55	23	10	0	65	1.23
13180--13211	9	3.6	9	95	0	55	12	28	0	59	1.34
13226--13297	32	2.2	32	90	4	110	12	27	5	54	1.60
13327--13393	16	4.7	16	68	30	53	20	19	1	58	1.48
13411--13453	23	1.9	22	90	4	68	16	16	4	62	1.48
13271--13506	38	6.1	38	84	5	244	17	20	4	57	1.57
13563--13668	32	3.3	31	83	10	133	16	21	4	56	1.59
13591--13696	32	2.9	37	78	16	123	17	20	4	56	1.59
13708--13745	20	2.0	20	89	5	60	39	15	5	39	1.70
13728--13832	55	1.9	54	86	5	149	26	19	4	49	1.68
13753--13919	86	1.9	86	83	7	214	20	20	5	52	1.67
13886--13975	43	2.1	44	85	6	121	20	20	5	54	1.64
13839--14016	99	1.8	97	84	4	241	21	20	6	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14044--14128	33	2.6	33	86	3	118	20	20	4	55	1.61
14078--14145	16	4.4	14	77	17	64	17	23	2	55	1.55
14045--14145	33	3.2	30	86	6	114	18	21	3	55	1.59
14108--14184	36	2.1	38	87	4	113	16	23	3	55	1.58
14149--14183	16	2.2	16	94	0	61	20	22	5	51	1.68
14212--14354	53	2.8	51	79	11	159	27	20	6	46	1.74
17536--17597	21	2.9	22	90	4	108	38	17	20	22	1.93
19233--19285	13	3.9	14	78	9	65	50	1	0	47	1.12
20323--20445	63	2.0	63	93	0	210	25	10	18	45	1.81
21197--21276	22	3.6	22	74	0	79	38	6	16	38	1.74
21322--21378	22	2.6	22	85	0	78	29	12	21	36	1.90
21318--21422	44	2.4	44	80	0	111	36	10	17	36	1.84
21360--21453	22	4.2	22	85	10	127	40	8	15	35	1.78
21360--21612	44	5.9	44	69	17	131	38	7	17	36	1.78
21456--21613	22	7.2	22	73	11	110	37	6	18	37	1.76
21348--21574	125	1.8	121	85	5	312	37	7	18	36	1.80
21472--21566	42	2.2	43	85	7	122	37	8	15	37	1.78
22039--22094	22	2.5	22	85	0	67	33	10	14	41	1.80
22562--22748	93	2.0	93	87	2	268	33	13	2	50	1.56
24370--24401	2	16.5	2	93	6	57	50	0	0	50	1.00
26567--26612	22	2.1	23	84	8	60	8	4	13	73	1.21
33779--33819	19	2.1	20	90	4	66	41	7	21	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42789--42910	30	4.1	30	88	0	163	22	31	18	26	1.97
45714--45743	11	2.7	11	89	0	51	6	53	6	33	1.53
50434--50871	36	12.1	36	74	9	300	38	28	15	18	1.91
50455--50871	149	2.9	143	79	7	412	39	27	15	17	1.90
50438--50873	143	3.0	143	78	9	461	38	27	15	18	1.91
50879--50956	24	3.2	24	78	7	70	44	3	19	32	1.68
51129--51409	140	2.0	140	95	0	499	38	18	17	25	1.93
52093--52218	49	2.6	49	97	0	234	52	8	0	38	1.38
52100--52236	18	8.2	17	70	18	83	52	8	0	38	1.36
53469--53520	16	2.9	19	83	16	83	46	11	3	38	1.59
53464--53527	19	3.5	19	79	12	80	42	10	3	43	1.55
53949--53985	19	2.0	19	89	5	58	32	0	8	59	1.27
55242--55293	22	2.5	21	78	9	61	69	1	5	23	1.20
57305--57339	11	3.2	11	88	11	54	0	20	0	80	0.72
57301--57346	16	3.0	15	84	12	58	0	21	0	78	0.76
57871--57915	22	2.0	22	100	0	90	26	26	4	42	1.74
60332--60363	13	2.4	14	90	10	50	59	6	6	28	1.46
60955--61013	19	3.2	19	66	9	59	30	22	8	38	1.83
60949--61098	35	4.2	36	82	6	180	34	18	8	38	1.80
61978--62011	16	2.1	16	89	10	52	0	23	0	76	0.79
64460--64885	71	5.9	71	74	11	344	38	29	14	17	1.89
64439--64808	107	3.4	108	81	8	383	38	30	13	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64495--64784	113	2.7	104	79	9	276	40	29	13	17	1.87
64439--64879	36	12.1	36	76	11	357	38	30	14	17	1.89

Tables:   1

The End!