Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011849.1 Corchorus capsularis cultivar CVL-1 contig11870, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134458

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6046--6100
17
3.2
17
89
0
92
32
7
16
43
1.75
6310--6335
9
2.9
9
100
0
52
46
11
0
42
1.40
7344--7388
21
2.1
21
91
4
72
33
8
37
20
1.83
9635--9725
44
2.1
44
100
0
182
20
24
19
35
1.96
10625--10802
89
2.0
89
97
0
338
22
4
22
50
1.67
10819--10937
59
2.0
59
100
0
238
15
8
36
40
1.77
11850--11956
16
6.8
16
75
8
94
6
14
38
41
1.71
13002--13038
6
6.3
6
82
17
51
0
13
48
37
1.43
14005--14056
2
26.0
2
90
0
77
44
1
0
53
1.11
14008--14066
28
2.1
28
100
0
118
38
3
0
57
1.15
29599--29625
1
27.0
1
100
0
54
0
0
0
100
0.00
37681--37705
8
3.1
8
100
0
50
0
12
0
88
0.53
37673--37706
13
2.6
14
86
13
54
0
17
0
82
0.67
41081--41144
9
7.1
9
83
0
56
50
0
48
1
1.10
48645--48803
60
2.7
60
84
2
212
34
17
18
29
1.94
48852--48969
60
2.0
60
88
5
175
27
13
22
37
1.91
70009--70038
11
2.7
11
100
0
60
0
6
0
93
0.35
73065--73108
19
2.3
19
100
0
88
54
15
13
15
1.71
74680--74741
31
2.1
30
87
6
90
48
17
3
30
1.63
75358--75412
28
2.1
27
83
10
69
30
7
9
52
1.60
75934--75996
3
21.0
3
100
0
126
33
0
0
66
0.92
81033--81074
21
2.0
21
95
0
75
50
14
16
19
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81130--81215
43
2.0
43
97
0
163
44
19
12
23
1.85
81415--81515
16
6.3
16
77
4
89
32
32
22
11
1.91
87707--87731
6
4.2
6
100
0
50
68
0
16
16
1.22
92694--92741
25
1.9
25
83
8
62
54
6
33
6
1.51
93741--93816
29
2.5
30
75
16
86
17
14
27
40
1.88
97663--97699
15
2.5
15
95
0
65
48
0
8
43
1.32
104498--104524
12
2.2
12
100
0
54
37
25
7
29
1.83
108544--108693
75
2.0
75
94
0
264
32
28
7
32
1.85
108931--108956
13
2.0
13
100
0
52
30
15
7
46
1.74
110766--110796
2
15.5
2
100
0
62
51
0
0
48
1.00
110897--110968
22
3.3
22
72
14
58
34
9
9
45
1.70
110970--111016
22
2.2
20
85
7
58
27
14
4
53
1.60
111157--111280
45
2.8
46
81
8
132
37
12
8
41
1.73
111155--111282
22
5.7
23
87
5
140
36
13
8
41
1.75
111311--111404
22
4.3
23
72
10
72
29
15
10
43
1.81
111556--111721
22
7.6
22
73
11
110
34
13
9
42
1.78
111821--111946
22
5.7
22
76
10
123
36
19
9
34
1.84
111821--112164
44
7.9
43
69
15
174
37
18
9
35
1.83
111982--112165
22
8.3
22
73
10
97
38
18
9
33
1.84
111989--112099
46
2.5
44
81
10
118
37
18
9
34
1.84
112331--112368
19
2.0
20
85
15
53
63
2
5
28
1.30
112647--112675
2
14.5
2
100
0
58
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
114504--114562
22
2.7
22
91
0
91
38
11
10
38
1.76
114606--114647
22
1.9
22
90
0
66
38
2
23
35
1.68
114615--114665
22
2.3
22
80
6
59
43
3
17
35
1.68
114701--114915
22
9.8
22
69
16
106
33
10
18
37
1.85
114770--114915
44
3.3
44
72
17
131
36
10
15
37
1.81
114703--114935
66
3.6
65
76
8
195
32
10
18
38
1.85
116518--116595
39
2.0
39
97
0
147
23
20
11
44
1.84
119448--119989
22
24.6
22
70
11
227
36
10
16
35
1.84
121930--121968
2
19.5
2
100
0
78
48
0
0
51
1.00
126843--128250
332
4.2
331
90
1
2200
33
14
15
36
1.88
128474--128512
12
3.2
12
85
7
53
58
7
10
23
1.56
131013--131040
12
2.3
12
100
0
56
64
7
7
21
1.43
133433--134458
332
3.1
331
93
2
1732
34
14
15
36
1.87

Tables:   1

The End!