Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011851.1 Corchorus capsularis cultivar CVL-1 contig11872, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13268

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108--293
38
4.8
38
78
8
169
52
6
13
26
1.66
408--466
21
2.8
21
79
5
57
55
1
22
20
1.52
441--480
14
2.9
14
84
0
53
52
2
22
22
1.59
413--509
50
2.0
50
89
2
151
54
2
21
21
1.55
463--572
35
3.1
35
81
11
102
55
2
20
21
1.56
450--907
71
6.1
71
78
14
315
52
5
19
21
1.66
413--580
85
2.0
85
80
6
189
55
2
20
21
1.55
556--702
22
6.8
22
73
13
108
53
6
19
21
1.66
529--669
64
2.2
63
81
12
162
54
5
18
21
1.64
654--907
36
7.1
36
90
2
397
51
6
20
21
1.69
719--787
14
5.4
14
67
29
55
50
5
21
21
1.69
658--949
107
2.7
107
91
4
460
50
6
21
21
1.71
888--959
21
3.4
21
72
1
63
47
8
23
20
1.77
871--971
42
2.4
42
77
9
116
46
7
23
21
1.77
1973--2096
33
3.7
33
77
12
112
24
41
25
9
1.85
3003--3036
8
4.1
8
85
7
50
58
14
2
23
1.50
8495--8618
33
3.7
33
81
8
144
23
41
27
7
1.80

Tables:   1

The End!