Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011854.1 Corchorus capsularis cultivar CVL-1 contig11875, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30103

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4531--4556
11
2.4
11
100
0
52
42
11
11
34
1.77
11905--11946
19
2.2
19
100
0
84
40
0
16
42
1.48
17983--18023
7
6.1
7
82
5
50
53
2
0
43
1.13
18518--18618
48
2.1
48
94
0
175
47
3
14
33
1.63
19006--19340
22
15.7
22
68
13
141
37
17
9
34
1.83
18980--19156
44
4.0
44
81
5
180
37
17
12
32
1.87
21151--21286
28
4.8
28
88
7
202
20
30
17
31
1.96
24985--25070
29
2.9
29
80
11
111
34
15
29
20
1.93
25368--25443
22
3.5
22
82
10
77
36
10
6
46
1.65
25389--25472
22
3.9
22
72
12
75
38
13
3
45
1.60
25550--25644
22
4.4
22
81
6
113
33
17
9
38
1.82
25522--25644
22
5.6
22
78
8
108
32
17
10
39
1.83
25525--26135
44
14.2
42
67
16
179
35
16
9
38
1.82
25652--25775
22
5.6
22
73
3
88
39
14
8
37
1.77
25829--25976
22
6.8
22
72
7
106
34
18
10
37
1.84
26044--26122
22
3.6
22
79
6
90
41
13
11
32
1.81
26108--26163
22
2.5
22
79
0
67
39
14
7
39
1.73
26356--26408
26
2.0
25
85
14
70
49
0
0
50
1.00

Tables:   1

The End!