Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011859.1 Corchorus capsularis cultivar CVL-1 contig11880, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72100

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13047--13072
2
13.0
2
100
0
52
50
0
0
50
1.00
14117--14148
2
16.0
2
100
0
64
50
0
0
50
1.00
14884--14917
16
2.1
16
100
0
68
14
0
38
47
1.45
14879--14914
16
2.3
15
86
9
54
11
0
38
50
1.38
16386--16430
22
2.0
22
83
8
56
51
31
11
6
1.63
16520--16552
2
16.5
2
93
0
57
48
0
3
48
1.17
20999--21035
3
12.3
3
94
0
65
62
0
2
35
1.10
22836--22892
28
2.0
28
100
0
114
42
7
10
40
1.66
24093--24162
35
2.1
33
91
5
113
50
15
5
28
1.67
24154--24179
12
2.2
12
100
0
52
30
15
11
42
1.82
25417--25442
3
8.7
3
100
0
52
34
0
0
65
0.93
26479--26515
15
2.2
18
86
13
53
24
0
5
70
1.08
26879--26904
2
13.0
2
100
0
52
50
0
0
50
1.00
31980--32022
18
2.4
18
81
14
54
32
2
9
55
1.44
39546--39597
25
2.1
25
88
0
77
32
19
7
40
1.80
40025--40075
3
17.3
3
95
4
95
35
0
0
64
0.94
41078--41177
31
3.3
29
78
10
103
27
24
15
34
1.94
41120--41184
29
2.2
29
81
10
69
26
29
12
32
1.92
41319--41347
14
2.0
15
93
6
51
68
20
3
6
1.27
43254--43337
31
2.8
30
82
5
107
34
17
21
26
1.96
44904--44952
15
3.3
15
85
2
64
18
0
0
81
0.69
44907--44952
12
3.9
12
82
2
58
19
0
0
80
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47356--47406
6
8.5
6
91
0
84
37
1
60
0
1.08
47933--47999
16
4.2
16
74
11
66
44
38
8
7
1.64
48878--48902
11
2.3
11
100
0
50
48
0
8
44
1.32
49273--49310
15
2.4
17
87
12
55
36
39
15
7
1.77
49808--49844
13
2.6
15
83
16
60
51
0
0
48
1.00
49922--50065
13
10.4
13
67
15
65
30
0
14
54
1.46
49954--50036
43
1.9
44
95
2
150
28
0
12
59
1.33
49953--50065
43
2.6
42
84
6
147
29
0
13
57
1.36
50216--50240
10
2.5
10
100
0
50
28
8
28
36
1.85
52700--53094
47
8.6
47
75
10
273
40
19
25
14
1.90
52892--53122
40
5.4
40
74
16
196
37
21
26
14
1.92
52748--53575
87
9.4
87
75
12
421
38
19
25
16
1.92
53208--53575
41
8.7
41
80
5
310
37
19
24
18
1.94
53243--53575
46
7.7
46
78
9
235
37
19
24
17
1.94
53497--53715
47
4.7
47
78
3
212
35
19
26
18
1.95
53497--53709
93
2.3
93
83
5
272
34
19
26
19
1.95
56536--56580
22
2.0
22
91
0
72
42
8
13
35
1.75
65170--65256
42
2.1
42
89
8
133
22
42
25
9
1.83

Tables:   1

The End!