Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011862.1 Corchorus capsularis cultivar CVL-1 contig11883, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58081

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
240--275
16
2.3
15
90
9
54
83
0
0
16
0.65
3022--3729
352
2.0
352
98
0
1362
35
21
13
30
1.91
5219--5262
23
1.9
23
100
0
88
40
25
4
29
1.75
5242--5334
35
2.7
35
98
1
179
36
23
11
27
1.90
13290--13324
5
6.6
5
87
12
52
62
2
0
34
1.10
13274--13328
12
4.8
12
86
10
80
58
5
0
36
1.21
15981--16027
19
2.5
19
86
6
60
19
2
0
78
0.85
23186--23238
27
2.0
27
100
0
106
30
33
11
24
1.90
23563--23602
12
3.3
12
82
0
53
10
30
27
32
1.89
24355--24394
21
2.0
21
85
5
55
42
17
17
22
1.89
29387--29425
13
2.9
13
84
3
51
30
28
10
30
1.90
30314--30353
21
2.1
18
86
13
53
25
27
10
37
1.88
41192--41234
22
2.0
22
100
0
86
37
32
9
20
1.85
42617--42672
21
2.6
21
91
2
85
16
17
44
21
1.86
44972--45040
30
2.3
30
100
0
138
26
18
31
23
1.97
45031--45074
22
2.0
22
86
0
61
29
25
22
22
1.99
55613--55684
33
2.2
33
92
0
117
25
9
18
47
1.78
56063--56121
30
2.0
30
90
6
93
30
16
30
22
1.96
57699--57840
33
4.3
32
81
8
124
10
28
42
19
1.84

Tables:   1

The End!