Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011865.1 Corchorus capsularis cultivar CVL-1 contig11886, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7894

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
873--978
45
2.4
45
91
0
176
30
16
23
30
1.96
6510--6569
21
2.8
21
80
9
68
25
18
8
48
1.75
6644--6706
7
8.7
7
74
6
54
17
17
4
60
1.53
6636--6741
22
5.0
22
88
5
155
20
18
4
55
1.60
6612--6902
42
7.4
40
71
17
191
18
20
4
56
1.59
6868--7207
60
5.7
59
75
14
299
17
21
5
55
1.61
6985--7044
15
4.3
14
73
14
61
16
21
1
60
1.45
6989--7114
27
4.7
25
69
18
76
16
22
3
57
1.53
6806--7221
181
2.3
182
92
6
688
17
22
4
55
1.60
6992--7074
35
2.4
35
90
4
125
16
20
3
59
1.52
6926--7162
121
1.9
123
82
9
299
17
21
5
56
1.60
7048--7090
19
2.3
19
87
0
59
16
23
4
55
1.59
6985--7228
14
17.8
14
64
20
70
17
22
4
56
1.57
6879--7211
81
3.6
94
76
19
335
17
21
4
55
1.60
7168--7228
7
8.6
7
75
10
61
16
24
1
57
1.48
7137--7221
36
2.4
35
88
2
116
17
22
4
55
1.60

Tables:   1

The End!