Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011866.1 Corchorus capsularis cultivar CVL-1 contig11887, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 964

Length: 1608
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31


Found at i:1196 original size:33 final size:33

Alignment explanation


    Indices: 1123--1215  Score: 98
    Period size: 33  Copynumber: 2.8  Consensus size: 33

       1113 GGCGCGAGTG

                          *                  
       1123 ACCGGCCACGCGACTTGGAGATGCCCGCGCAAC
          1 ACCGGCCACGCGACATGGAGATGCCCGCGCAAC

              *     *                *      * 
       1156 ACTGGCCATGCGACATGGAGATGCCTG-GCCATC
          1 ACCGGCCACGCGACATGGAGATGCCCGCG-CAAC

                       *      **       
       1189 ACCGGCCACGCAACATGGCCATGCCCG
          1 ACCGGCCACGCGACATGGAGATGCCCG

       1216 GTCACACCCG


Statistics
Matches: 48,  Mismatches: 11, Indels: 2
        0.79            0.18        0.03

Matches are distributed among these distances:
  32    1  0.02
  33   47  0.98

ACGTcount: A:0.22, C:0.38, G:0.29, T:0.12


Consensus pattern (33 bp):   
ACCGGCCACGCGACATGGAGATGCCCGCGCAAC
Done.