Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011867.1 Corchorus capsularis cultivar CVL-1 contig11888, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50249

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1719--1751
15
2.2
15
94
0
57
21
6
30
42
1.77
1973--2039
32
2.1
32
94
0
116
22
5
34
37
1.79
1980--2073
32
3.1
32
83
7
99
25
8
29
36
1.86
2061--2085
12
2.1
12
100
0
50
40
8
32
20
1.81
5004--5031
14
2.0
14
100
0
56
7
50
7
35
1.57
5089--5240
46
3.3
46
87
0
223
11
28
22
38
1.88
8295--8327
15
2.2
15
100
0
66
18
6
33
42
1.75
8441--8593
78
2.0
78
97
0
288
22
11
28
37
1.89
8576--8642
32
2.1
32
94
0
116
22
5
34
37
1.79
8583--8676
32
3.1
32
80
7
90
25
7
29
37
1.83
8664--8688
12
2.1
12
100
0
50
40
8
32
20
1.81
9389--9415
14
1.9
14
100
0
54
44
0
3
51
1.19
9537--9581
9
5.2
9
86
7
67
55
8
0
35
1.31
10665--10708
21
2.1
21
86
0
61
29
31
22
15
1.95
13288--13314
11
2.5
11
100
0
54
18
48
25
7
1.74
14223--14268
24
1.9
24
81
0
56
23
8
15
52
1.70
15630--15654
12
2.1
12
100
0
50
8
24
8
60
1.52
16705--16782
32
2.4
32
78
0
93
7
30
30
30
1.85
19601--19656
11
5.2
10
79
12
58
16
12
19
51
1.75
20144--20216
29
2.4
30
79
4
76
28
19
12
39
1.88
20285--20359
10
7.9
10
82
14
88
33
1
0
65
1.01
20285--20358
9
7.9
9
82
15
80
32
1
0
66
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20285--20359
18
3.9
19
84
8
100
33
1
0
65
1.01
20285--20359
27
2.7
27
82
12
98
33
1
0
65
1.01
20373--20435
31
2.0
31
96
0
117
36
12
15
34
1.86
22909--22957
23
2.1
23
96
0
89
36
6
8
48
1.58
25694--25823
50
2.6
50
80
8
133
24
27
14
33
1.94
25684--26499
48
16.9
48
84
4
779
23
30
13
31
1.94
30918--30944
2
13.5
2
100
0
54
48
0
0
51
1.00
30944--30977
2
17.0
2
100
0
68
0
0
50
50
1.00
35608--35655
23
2.1
23
100
0
96
31
12
25
31
1.92
35661--35793
67
2.0
67
98
0
257
18
17
22
42
1.89
36701--36732
2
16.0
2
100
0
64
50
0
0
50
1.00
49145--49532
49
7.9
49
84
4
415
33
13
30
22
1.93
50168--50221
26
2.0
26
82
3
63
55
11
11
22
1.66

Tables:   1

The End!