Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011873.1 Corchorus capsularis cultivar CVL-1 contig11894, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5867
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.36


Found at i:3173 original size:19 final size:21

Alignment explanation


    Indices: 3137--3178  Score: 61
    Period size: 20  Copynumber: 2.1  Consensus size: 21

       3127 TTCTTCTATT

                                 
       3137 TTTAATTACTTGCAA-TTTAG
          1 TTTAATTACTTGCAATTTTAG

                       *         
       3157 TTTAATTA-TTTCAATTTTAG
          1 TTTAATTACTTGCAATTTTAG

              
       3177 TT
          1 TT

       3179 CATAGTTTAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  19    5  0.25
  20   15  0.75

ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57


Consensus pattern (21 bp):   
TTTAATTACTTGCAATTTTAG
Done.