Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011874.1 Corchorus capsularis cultivar CVL-1 contig11895, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80839

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
649--712
24
2.9
23
79
9
71
29
17
4
48
1.67
736--773
3
12.7
3
100
0
76
68
0
31
0
0.90
4317--4415
37
2.8
35
87
6
144
21
10
13
55
1.66
5262--5293
2
16.0
2
100
0
64
50
0
0
50
1.00
6919--7018
31
3.2
31
84
0
119
18
22
27
33
1.96
6968--7070
53
1.9
53
84
0
134
18
17
25
38
1.92
9825--9974
53
2.8
52
79
11
187
38
28
14
18
1.91
9955--10030
30
2.5
30
79
14
84
42
27
11
18
1.85
17698--17748
15
3.5
14
89
7
75
54
27
1
15
1.52
17698--17748
7
7.0
7
91
6
75
54
27
1
15
1.52
17698--17757
22
2.7
22
92
2
93
53
26
1
18
1.54
22573--22723
53
2.8
53
80
5
189
39
29
11
19
1.87
22706--22781
30
2.5
30
79
14
84
42
27
11
18
1.85
22862--22897
2
18.0
2
94
0
63
50
2
0
47
1.15
24668--24697
12
2.5
12
94
0
51
36
0
36
26
1.57
27205--27252
17
3.0
17
73
14
57
29
2
10
58
1.43
27254--27300
10
4.6
10
84
5
58
34
0
8
57
1.29
27255--27300
21
2.2
20
84
3
56
34
0
8
56
1.30
31111--31191
30
2.7
31
83
5
87
34
30
7
27
1.84
32035--32136
37
2.8
37
80
5
116
18
35
19
26
1.95
42993--43026
11
3.1
11
91
0
59
52
17
0
29
1.45
46668--46712
20
2.2
20
84
4
54
66
8
8
15
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52132--52171
17
2.4
17
86
0
53
10
0
15
75
1.05
53381--53419
16
2.4
16
91
0
60
41
38
12
7
1.72
55290--55336
2
24.0
2
86
4
69
51
2
0
46
1.13
62420--62487
27
2.7
24
75
16
66
48
5
1
44
1.36
62689--62718
14
2.1
14
93
0
51
46
23
0
30
1.52
70074--70127
11
5.0
11
72
20
51
12
24
1
61
1.42
70098--70135
20
1.9
20
88
0
58
7
31
0
60
1.25
75064--75101
20
1.9
20
88
0
58
7
31
0
60
1.25
75815--75892
29
2.7
28
77
15
86
39
29
14
16
1.88
77047--77087
6
7.3
6
78
15
52
0
29
2
68
1.03
77770--77800
2
15.5
2
100
0
62
48
0
0
51
1.00
79812--79890
39
2.0
39
90
0
122
54
2
10
32
1.47
80179--80239
24
2.3
26
78
16
72
37
32
0
29
1.58
80305--80413
34
3.1
34
83
12
155
45
11
13
28
1.79
80305--80418
39
3.1
38
87
8
164
45
12
13
28
1.79

Tables:   1

The End!