Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011877.1 Corchorus capsularis cultivar CVL-1 contig11898, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1764
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34


Found at i:1163 original size:27 final size:28

Alignment explanation


    Indices: 1133--1202  Score: 97
    Period size: 27  Copynumber: 2.5  Consensus size: 28

       1123 CGCCCAAGGT

                                        
       1133 ATTTTGGTCATTTTTGCACCCA-GGGGC
          1 ATTTTGGTCATTTTTGCACCCAGGGGGC

                               **       
       1160 ATTTTGGTCATTTTTGCACTTAGGGGGC
          1 ATTTTGGTCATTTTTGCACCCAGGGGGC

              *  *         
       1188 ATCTTAGTCATTTTT
          1 ATTTTGGTCATTTTT

       1203 TTTAAAGTTC


Statistics
Matches: 38,  Mismatches: 4, Indels: 1
        0.88            0.09        0.02

Matches are distributed among these distances:
  27   20  0.53
  28   18  0.47

ACGTcount: A:0.16, C:0.17, G:0.23, T:0.44


Consensus pattern (28 bp):   
ATTTTGGTCATTTTTGCACCCAGGGGGC

Done.