Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011878.1 Corchorus capsularis cultivar CVL-1 contig11899, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4228
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30


Found at i:2772 original size:28 final size:27

Alignment explanation


    Indices: 2710--2786  Score: 100
    Period size: 27  Copynumber: 2.8  Consensus size: 27

       2700 TAGGGTCGCC

                  *                    
       2710 CAAGGGTATTTTGGTCATTTTTGCACT
          1 CAAGGGCATTTTGGTCATTTTTGCACT

                                       
       2737 CAAGGGCATTTTGGTCATTTTTGCACT
          1 CAAGGGCATTTTGGTCATTTTTGCACT

            *  *      *  *         
       2764 TAGGGGGCATCTTAGTCATTTTT
          1 CA-AGGGCATTTTGGTCATTTTT

       2787 TTAAAGTTCA


Statistics
Matches: 44,  Mismatches: 5, Indels: 1
        0.88            0.10        0.02

Matches are distributed among these distances:
  27   27  0.61
  28   17  0.39

ACGTcount: A:0.18, C:0.16, G:0.23, T:0.43


Consensus pattern (27 bp):   
CAAGGGCATTTTGGTCATTTTTGCACT
Done.