genome.fa.s11879.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011879.1 Corchorus capsularis cultivar CVL-1 contig11900, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28809

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3007--3191	38	4.8	38	80	7	187	52	7	14	25	1.67
3007--3149	76	1.9	76	89	0	223	53	6	13	26	1.64
3305--3344	21	1.9	21	84	0	53	57	2	22	17	1.52
3338--3377	14	2.9	14	84	0	53	52	2	22	22	1.59
3310--3406	50	2.0	50	87	2	142	54	3	21	20	1.58
3360--3469	35	3.1	35	81	11	102	55	2	20	21	1.56
3347--3686	71	4.5	73	73	19	250	53	4	20	21	1.63
3310--3477	85	2.0	85	81	6	198	55	2	20	20	1.57
3453--3600	22	6.8	21	77	10	120	53	5	20	20	1.65
3428--3671	65	3.7	66	78	13	207	53	5	19	21	1.64
3453--3698	71	3.1	79	83	10	267	52	6	19	21	1.68
3552--3741	35	5.1	35	83	9	236	50	6	22	21	1.71
3453--3762	21	15.5	20	70	17	143	50	6	21	21	1.70
3474--3762	35	7.3	41	76	13	175	50	6	22	21	1.71
6877--7220	58	6.0	58	91	1	539	40	25	13	19	1.88
6877--7225	115	3.0	116	89	1	540	41	25	13	19	1.88
6877--7244	173	2.1	172	94	2	641	40	26	13	19	1.89
8498--8909	72	5.7	73	91	2	568	22	27	19	31	1.98
9285--9321	19	1.9	19	88	0	56	35	29	13	21	1.92
11360--11435	30	2.5	31	77	14	88	39	28	14	17	1.89
13544--13581	19	2.1	18	85	9	51	34	0	18	47	1.49
13713--13739	12	2.2	12	100	0	54	37	40	7	14	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16217--16275	2	31.5	2	80	13	72	44	1	1	52	1.21
17534--17558	2	12.5	2	100	0	50	48	0	0	52	1.00
24711--24742	16	2.0	16	93	0	55	50	28	12	9	1.71
25579--25621	22	2.0	22	85	0	59	48	2	0	48	1.14
26623--26652	15	2.0	15	93	0	51	10	26	50	13	1.73
27036--27175	51	2.7	51	86	2	201	17	25	35	20	1.95
28531--28594	34	1.9	34	87	9	96	17	21	3	57	1.53
28567--28622	26	2.2	24	77	17	60	23	26	3	46	1.68
28647--28684	20	1.9	20	88	0	58	26	18	5	50	1.68
28668--28809	22	6.9	22	70	17	99	22	19	4	52	1.65
28608--28809	77	2.6	78	93	3	336	22	20	5	51	1.68
28613--28769	35	4.3	35	76	14	147	21	21	5	51	1.68

Tables:   1

The End!