Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011884.1 Corchorus capsularis cultivar CVL-1 contig11905, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2213
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:1593 original size:22 final size:24

Alignment explanation


    Indices: 1545--1605  Score: 74
    Period size: 22  Copynumber: 2.6  Consensus size: 24

       1535 AATTAAATCT

                 *                   
       1545 AACAAACAAGTAAAATTACTAAGAA
          1 AACAATCAAGTAAAATTAC-AAGAA

                                    
       1570 AACAATCAAG-AAAATTA-AAGAA
          1 AACAATCAAGTAAAATTACAAGAA

                  *        
       1592 AACAATTAA-TAAAA
          1 AACAATCAAGTAAAA

       1606 AAGCAGTGAA


Statistics
Matches: 33,  Mismatches: 2, Indels: 5
        0.82            0.05        0.12

Matches are distributed among these distances:
  22   17  0.52
  24    7  0.21
  25    9  0.27

ACGTcount: A:0.67, C:0.10, G:0.07, T:0.16


Consensus pattern (24 bp):   
AACAATCAAGTAAAATTACAAGAA
Done.