Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001189.1 Corchorus capsularis cultivar CVL-1 contig01189, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5063
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:266 original size:2 final size:2

Alignment explanation


    Indices: 259--291  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

        249 TTTTAGCAAG

                                                             
        259 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        292 GTACTAGCTA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:4289 original size:11 final size:12

Alignment explanation


    Indices: 4260--4289  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       4250 AATAAGCATT

                        
       4260 CCAATTTGTTAA
          1 CCAATTTGTTAA

                        
       4272 CCAATTTGTTAA
          1 CCAATTTGTTAA

                   
       4284 -CAATTT
          1 CCAATTT

       4290 CTGTCATATG


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11    6  0.33
  12   12  0.67

ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43


Consensus pattern (12 bp):   
CCAATTTGTTAA
Done.