Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011891.1 Corchorus capsularis cultivar CVL-1 contig11912, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54974

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2176--2348
31
5.5
31
86
2
96
18
23
24
33
1.97
2167--2342
63
2.8
61
82
4
208
17
21
25
35
1.95
2940--3181
120
2.0
120
97
0
457
28
19
15
37
1.92
7201--7239
17
2.3
17
86
0
51
74
2
15
7
1.15
8656--8694
21
1.9
20
89
5
60
17
2
10
69
1.28
12686--12808
62
2.0
62
91
3
203
34
9
9
45
1.70
12802--12840
21
1.9
20
89
5
60
17
2
10
69
1.28
14833--14958
62
2.0
61
87
6
182
34
16
9
38
1.81
24778--24826
21
2.3
20
79
6
53
69
6
4
20
1.27
27195--27224
13
2.3
13
94
0
51
43
6
13
36
1.70
30097--30153
21
2.9
18
80
16
62
28
10
38
22
1.87
35201--35251
24
2.1
24
100
0
102
19
19
17
43
1.89
35640--35665
2
13.0
2
100
0
52
50
0
0
50
1.00
39419--39466
19
2.4
19
75
6
51
58
14
6
20
1.58
41277--41306
15
2.0
15
93
0
51
6
16
13
63
1.50
43272--43304
15
2.1
16
88
5
50
42
33
15
9
1.78
43988--44028
4
10.8
4
80
19
52
48
2
21
26
1.63
45355--45380
2
13.0
2
100
0
52
50
0
0
50
1.00
47199--47250
22
2.3
24
83
12
74
50
0
0
50
1.00
53746--53793
25
1.9
25
100
0
96
58
4
8
29
1.46

Tables:   1

The End!