genome.fa.s11892.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011892.1 Corchorus capsularis cultivar CVL-1 contig11913, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119451

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4348--4388	20	2.0	20	90	0	64	31	34	4	29	1.79
4406--4440	18	1.9	18	94	0	61	25	34	8	31	1.86
5167--5241	36	2.1	36	89	0	114	48	18	6	26	1.73
6865--6889	13	1.9	13	100	0	50	56	0	0	44	0.99
7250--7274	13	1.9	13	100	0	50	44	0	0	56	0.99
7932--7963	2	16.5	2	93	6	57	50	0	0	50	1.00
7994--8375	203	1.9	202	86	2	543	34	17	17	30	1.93
9301--9360	24	2.5	24	94	2	104	3	28	8	60	1.42
9323--9404	41	2.0	41	90	4	128	7	30	4	57	1.47
16006--16035	15	2.0	15	93	0	51	26	16	20	36	1.93
19621--19665	9	4.7	9	81	13	54	84	4	11	0	0.76
19622--19665	21	2.2	20	87	4	61	86	4	9	0	0.70
26759--26847	31	2.9	31	89	0	142	28	10	24	37	1.88
30625--30655	2	15.5	2	100	0	62	0	48	0	51	1.00
36055--36132	27	3.2	27	69	27	91	37	10	11	41	1.75
48392--48449	21	2.8	21	76	5	55	44	22	12	20	1.84
50296--50407	39	2.9	38	80	9	136	16	10	26	45	1.81
51312--51374	26	2.3	28	86	5	85	19	28	20	31	1.97
50932--51445	256	2.0	256	93	0	875	25	24	22	27	2.00
54103--54140	16	2.4	17	87	12	55	10	13	39	36	1.79
54043--54295	101	2.5	102	90	5	377	12	14	35	37	1.83
55622--55656	16	2.2	16	90	5	54	5	14	42	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55837--55871	15	2.4	15	90	4	54	54	2	5	37	1.39
56888--56927	6	6.8	6	85	5	55	77	2	2	17	0.99
56888--56927	18	2.3	17	91	4	62	77	2	2	17	0.99
65691--65715	1	25.0	1	100	0	50	0	0	0	100	0.00
66490--66530	18	2.3	18	87	8	57	14	0	0	85	0.60
67120--67148	15	1.9	15	100	0	58	55	10	20	13	1.68
67133--67373	123	2.0	123	98	0	464	51	15	14	19	1.77
68757--68809	27	1.9	28	96	3	99	7	32	7	52	1.58
81905--81931	13	2.1	13	100	0	54	22	14	14	48	1.81
83076--83105	11	2.7	11	89	0	51	30	10	30	30	1.90
84854--84901	18	2.7	18	76	0	51	22	8	20	47	1.77
94598--94746	71	2.1	71	94	0	262	43	8	22	25	1.81
94797--95123	41	8.0	41	90	1	503	39	11	20	28	1.87
95131--95352	37	5.9	37	91	1	363	47	12	17	22	1.80
95131--95352	75	3.0	74	92	2	363	47	12	17	22	1.80
95130--95352	112	2.0	113	94	0	394	47	12	17	22	1.80
95342--95592	41	6.3	41	78	7	232	43	9	22	24	1.83
95342--95514	82	2.1	82	88	4	267	46	9	19	24	1.80
95486--95606	37	3.3	37	83	2	154	36	10	27	25	1.89
95594--95705	37	3.1	37	88	6	165	37	10	25	26	1.88
96064--96113	19	2.6	20	81	6	59	32	6	16	46	1.71
97147--97187	6	7.0	6	91	2	66	51	12	0	36	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99633--99679	23	2.0	24	87	8	69	57	19	4	19	1.57
100351--100393	10	4.0	10	83	16	59	9	27	51	11	1.69
103767--103845	39	2.0	41	82	12	101	60	5	7	26	1.45
104274--104350	6	13.0	6	93	1	129	50	15	0	33	1.44
109032--109109	35	2.2	35	81	0	84	35	17	8	37	1.82
109087--109215	64	2.0	64	84	4	170	34	13	9	41	1.77
109157--109228	16	4.3	16	74	10	72	37	16	5	40	1.72
109209--109249	21	2.0	21	85	0	55	39	14	4	41	1.67
109152--109279	56	2.4	56	81	6	149	38	15	6	39	1.73
109231--109321	43	2.1	43	87	0	128	38	16	7	37	1.77
109335--109556	43	5.0	43	86	8	291	37	17	8	36	1.81
109175--109556	100	4.0	100	81	10	351	37	17	8	37	1.79
109461--109532	16	4.3	16	76	10	81	38	16	4	40	1.68
109818--109849	11	2.9	11	90	0	55	37	0	18	43	1.51
111150--111184	18	1.9	18	88	0	52	17	11	14	57	1.66
111184--111220	6	6.3	6	90	3	58	37	0	10	51	1.37
111574--111606	17	2.0	17	88	5	50	51	6	3	39	1.42
115565--115596	11	2.9	11	90	0	55	37	0	18	43	1.51
115565--115624	22	2.9	22	76	19	65	41	3	18	36	1.67
115575--115612	19	2.1	18	90	5	58	44	2	21	31	1.66
116974--117004	14	2.2	14	94	0	53	16	9	6	67	1.39

Tables:   1

The End!