genome.fa.s11893.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011893.1 Corchorus capsularis cultivar CVL-1 contig11914, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115359

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1115--1206	27	3.4	27	80	4	96	44	23	14	17	1.85
1475--1724	59	4.3	58	90	2	321	26	25	13	35	1.92
4616--4668	14	3.7	14	82	12	63	33	13	9	43	1.76
7320--7397	35	2.2	35	81	0	84	37	17	7	37	1.79
7445--7516	16	4.3	16	72	10	63	38	16	5	38	1.72
7375--7503	64	2.0	65	86	4	181	35	13	8	41	1.76
7440--7567	56	2.4	56	80	6	140	39	14	6	39	1.72
7519--7603	43	2.0	43	85	0	116	37	15	8	38	1.77
7619--7879	43	6.1	43	83	13	322	37	19	7	36	1.79
7463--7710	100	2.5	99	87	2	327	36	17	8	37	1.79
7662--7929	35	7.1	35	73	17	184	37	17	7	36	1.79
7748--7911	16	9.4	16	68	18	78	38	17	6	37	1.75
7765--7823	19	3.3	19	64	22	54	35	18	10	35	1.85
7705--7876	78	2.1	79	87	10	240	37	19	6	36	1.79
7784--7929	56	2.7	55	88	7	212	39	16	6	37	1.75
7862--7909	21	2.3	21	85	0	60	39	10	6	43	1.64
10949--10973	2	12.5	2	100	0	50	48	0	0	52	1.00
11447--11538	27	3.4	27	80	4	96	44	23	14	17	1.85
14020--14053	12	3.0	11	87	8	50	79	2	14	2	0.97
16134--16200	14	4.6	14	83	10	73	37	8	13	40	1.76
16844--16907	9	6.6	9	86	10	65	75	0	9	15	1.05
16870--16902	12	2.8	12	100	0	66	69	0	15	15	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18274--18425	67	2.3	67	92	0	250	26	25	23	23	2.00
18557--18803	123	2.0	124	86	3	347	28	18	16	36	1.93
19156--19263	54	2.0	54	100	0	216	44	14	11	29	1.80
22430--22464	18	1.9	18	88	0	52	77	0	20	2	0.90
27385--27442	21	2.6	22	76	15	57	44	8	6	39	1.62
35835--35871	19	2.0	18	89	5	56	40	8	21	29	1.82
38271--38374	52	2.0	52	90	0	163	28	24	25	22	1.99
40197--40233	18	2.1	18	94	0	65	27	8	21	43	1.80
40236--40350	18	6.2	18	73	13	90	27	7	26	37	1.84
44673--44816	50	2.9	49	91	3	227	21	13	34	30	1.92
53088--53228	75	1.9	76	85	4	196	36	7	25	29	1.84
53422--53566	50	2.9	50	91	2	229	22	13	33	30	1.93
55573--55599	14	1.9	14	100	0	54	14	14	0	70	1.17
55596--55646	6	9.2	6	81	12	56	31	1	13	52	1.51
55596--55646	11	4.6	12	72	18	56	31	1	13	52	1.51
55591--55643	27	2.0	27	100	0	106	30	3	11	54	1.53
61463--61526	28	2.3	28	100	0	128	15	39	28	17	1.90
61953--61986	14	2.4	14	90	0	50	8	8	2	79	1.03
68855--68978	66	1.9	65	86	1	176	45	15	21	17	1.85
69781--70001	113	1.9	115	89	3	347	34	19	23	22	1.97
69728--70010	58	5.0	56	82	7	324	34	19	23	22	1.96
71428--71478	16	3.0	16	83	11	57	45	19	23	11	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71450--71481	16	2.0	16	100	0	64	43	18	25	12	1.85
71714--71879	57	2.9	56	70	17	142	38	24	10	27	1.87
74874--75857	493	2.0	493	99	0	1950	34	14	11	39	1.82
76920--77017	51	1.9	51	91	0	160	39	12	13	34	1.82
84076--84129	20	2.9	20	78	10	62	44	0	5	50	1.25
98012--98040	2	14.5	2	100	0	58	48	0	0	51	1.00
99487--100283	439	1.8	440	82	5	1047	30	13	14	42	1.83
100552--100933	201	1.9	201	100	0	764	32	15	10	41	1.81
106619--106653	17	2.1	17	100	0	70	34	25	22	17	1.96
108416--108478	2	31.5	2	86	0	72	49	9	0	41	1.35
110043--110102	23	2.4	25	86	8	79	13	8	20	58	1.60
110043--110102	25	2.5	24	86	10	86	13	8	20	58	1.60
110155--110195	2	21.5	2	87	9	59	46	0	2	51	1.14

Tables:   1

The End!