Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011896.1 Corchorus capsularis cultivar CVL-1 contig11917, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5445
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.31


Found at i:1857 original size:10 final size:10

Alignment explanation


    Indices: 1842--1866  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

       1832 GAGGACTCTA

                      
       1842 GAATTTTCTG
          1 GAATTTTCTG

                      
       1852 GAATTTTCTG
          1 GAATTTTCTG

                 
       1862 GAATT
          1 GAATT

       1867 GTGCAGCAAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48


Consensus pattern (10 bp):   
GAATTTTCTG

Found at i:3170 original size:18 final size:18

Alignment explanation


    Indices: 3135--3169  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       3125 CTCCTCTTGC

                              
       3135 ATGAAAAACACTTTTTTT
          1 ATGAAAAACACTTTTTTT

                    *         
       3153 ATGAAAAAGA-TTTTTTT
          1 ATGAAAAACACTTTTTTT

       3170 TTAAACTACC


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    7  0.44
  18    9  0.56

ACGTcount: A:0.40, C:0.06, G:0.09, T:0.46


Consensus pattern (18 bp):   
ATGAAAAACACTTTTTTT
Done.