Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011897.1 Corchorus capsularis cultivar CVL-1 contig11918, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5152
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.31


Found at i:3295 original size:6 final size:6

Alignment explanation


    Indices: 3279--3310  Score: 57
    Period size: 6  Copynumber: 5.5  Consensus size: 6

       3269 AAAACAAAGC

                                                  
       3279 AAATC- AAATCT AAATCT AAATCT AAATCT AAA
          1 AAATCT AAATCT AAATCT AAATCT AAATCT AAA

       3311 GCAAATTAAT


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    5  0.19
   6   21  0.81

ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28


Consensus pattern (6 bp):   
AAATCT

Found at i:3863 original size:10 final size:10

Alignment explanation


    Indices: 3848--3872  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

       3838 GAGGACTCTA

                      
       3848 GAATTTTCTG
          1 GAATTTTCTG

                      
       3858 GAATTTTCTG
          1 GAATTTTCTG

                 
       3868 GAATT
          1 GAATT

       3873 GTGCAGCAAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48


Consensus pattern (10 bp):   
GAATTTTCTG
Done.