Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011903.1 Corchorus capsularis cultivar CVL-1 contig11924, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4927
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:1274 original size:21 final size:21

Alignment explanation


    Indices: 1245--1284  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1235 CTTACACGCC

                *         *      
       1245 CTCTGACATGCTGATATGGCA
          1 CTCTAACATGCTGACATGGCA

                               
       1266 CTCTAACATGCTGACATGG
          1 CTCTAACATGCTGACATGG

       1285 ATGTCAACGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28


Consensus pattern (21 bp):   
CTCTAACATGCTGACATGGCA

Found at i:3921 original size:16 final size:15

Alignment explanation


    Indices: 3900--3929  Score: 51
    Period size: 16  Copynumber: 1.9  Consensus size: 15

       3890 GGTTTCCCTG

                            
       3900 TTCAAATAATTGCAAT
          1 TTCAAATAA-TGCAAT

                          
       3916 TTCAAATAATGCAA
          1 TTCAAATAATGCAA

       3930 AATGTTGAAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    5  0.36
  16    9  0.64

ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33


Consensus pattern (15 bp):   
TTCAAATAATGCAAT
Done.