genome.fa.s11904.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011904.1 Corchorus capsularis cultivar CVL-1 contig11925, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93445

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199--260	32	1.9	32	83	0	79	40	9	35	14	1.79
2303--2344	13	2.9	14	86	10	50	76	0	16	7	1.00
7814--7844	10	3.1	10	95	0	53	83	0	16	0	0.64
7867--7993	44	2.9	45	85	5	170	37	7	18	37	1.78
8695--8732	12	3.0	12	88	11	58	76	0	23	0	0.79
8687--8743	20	2.8	20	84	12	73	73	0	24	1	0.92
8698--8743	14	3.4	14	88	8	60	73	0	23	2	0.94
9292--9352	29	2.1	29	96	0	113	40	19	11	27	1.86
9595--9959	69	5.3	69	77	6	353	25	27	19	27	1.99
9595--9960	139	2.6	138	90	2	556	25	27	19	27	1.99
10069--10298	47	4.9	47	88	3	336	20	23	20	36	1.95
10069--10298	95	2.4	94	89	3	345	20	23	20	36	1.95
10623--10696	28	2.6	28	89	8	107	13	10	27	48	1.75
14336--14378	7	5.9	7	81	8	50	79	4	13	2	1.00
16794--16902	41	2.7	41	84	2	139	23	21	12	42	1.87
17323--17794	125	3.8	125	84	2	601	30	16	16	36	1.91
17340--17794	248	1.8	248	84	1	626	30	16	16	36	1.91
18000--18051	17	3.2	16	86	10	70	28	0	0	71	0.87
18000--18052	7	6.9	7	78	19	52	30	0	0	69	0.88
17991--18053	16	3.8	17	83	10	76	28	0	0	71	0.86
19852--19919	19	3.8	18	81	11	77	72	1	25	1	1.02
28695--28720	11	2.4	11	100	0	52	53	7	7	30	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32709--32734	12	2.2	12	100	0	52	15	7	23	53	1.67
33782--33834	22	2.4	22	78	15	65	62	7	7	22	1.47
43414--43447	16	2.1	17	94	5	61	64	5	17	11	1.45
50268--50307	15	2.6	15	92	4	62	15	7	5	72	1.24
54507--54621	36	3.2	37	86	3	153	31	20	9	39	1.84
54507--54634	36	3.5	37	82	7	113	30	21	9	39	1.85
54644--54860	37	5.9	37	88	6	307	22	29	7	40	1.81
54644--54860	110	2.0	111	88	4	323	22	29	7	40	1.81
54969--55156	41	4.8	40	77	10	199	22	22	11	43	1.86
54936--55156	117	1.9	116	89	0	343	24	20	11	43	1.85
55158--55305	37	4.1	36	87	2	206	25	18	8	47	1.76
55158--55305	73	2.0	73	86	2	208	25	18	8	47	1.76
55318--55696	72	5.3	71	92	2	589	25	23	8	42	1.82
55420--55541	41	3.2	41	65	29	115	24	22	7	45	1.78
55318--55696	143	2.6	142	91	3	589	25	23	8	42	1.82
55525--55585	31	2.0	29	81	12	70	27	22	6	42	1.78
55555--55684	40	3.4	38	69	24	96	23	23	9	44	1.81
55674--55854	76	2.3	80	80	9	185	27	20	11	40	1.86
55747--55854	41	2.6	41	88	0	162	25	22	13	38	1.91
58994--59057	25	2.5	26	84	2	85	43	21	18	15	1.87
71671--71700	2	15.5	2	93	6	53	50	0	0	50	1.00
73491--73543	27	2.0	27	85	7	74	39	9	1	49	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76557--76657	53	1.9	53	85	0	139	39	27	16	15	1.90
76609--76707	31	3.2	31	83	0	117	34	27	20	18	1.95
77688--77719	10	3.4	10	87	12	50	18	15	9	56	1.66
78978--79009	10	3.4	10	87	12	50	18	15	9	56	1.66
79957--80013	30	1.9	30	92	0	96	24	31	3	40	1.72
82021--82061	12	3.3	13	80	10	50	19	14	2	63	1.41
82900--82985	45	1.9	45	92	4	147	34	17	22	25	1.95
87033--87058	2	13.0	2	100	0	52	50	0	0	50	1.00
87525--87591	33	2.0	33	82	0	80	32	5	10	50	1.61
88866--88936	37	1.9	37	94	0	124	38	8	16	36	1.80

Tables:   1

The End!