Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011905.1 Corchorus capsularis cultivar CVL-1 contig11926, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14655

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27--115
22
4.0
22
67
16
67
38
8
16
35
1.81
154--191
19
2.0
20
85
15
53
28
5
2
63
1.30
357--459
22
4.6
22
67
16
68
38
8
16
35
1.80
356--495
22
6.3
21
72
10
66
34
9
19
37
1.84
517--645
56
2.3
56
81
7
138
36
8
18
36
1.82
595--940
22
15.5
22
70
12
73
39
10
15
33
1.82
1018--1065
19
2.5
19
93
3
78
45
10
18
25
1.81
1018--1505
22
22.5
22
71
12
271
37
10
16
34
1.84
1119--1221
45
2.3
44
80
5
118
42
8
17
31
1.80
955--1505
44
12.8
45
71
15
271
37
10
16
35
1.83
1470--1802
159
2.1
159
96
1
616
37
10
13
37
1.80
1665--1705
22
1.9
21
85
5
55
51
4
12
31
1.60
1740--1825
45
1.9
45
83
4
111
36
10
13
39
1.80
3304--3527
112
2.0
112
97
0
421
39
20
11
28
1.87
4442--4476
3
11.7
3
100
0
70
68
0
0
31
0.90
4580--4634
24
2.3
23
79
14
58
49
1
5
43
1.36
4940--4985
23
2.0
23
100
0
92
43
17
8
30
1.79
6572--6618
16
2.9
16
72
12
51
17
8
36
38
1.80
6573--6667
32
3.0
32
84
0
118
18
10
32
37
1.85
6811--6849
20
2.0
20
85
10
53
35
5
5
53
1.45
6852--6895
22
2.0
22
90
0
70
11
15
29
43
1.82
6869--6956
16
5.5
16
71
5
61
6
12
29
51
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7418--7577
66
2.4
67
88
5
241
35
19
20
25
1.96
14385--14421
17
2.2
17
100
0
74
35
5
13
45
1.66

Tables:   1

The End!