Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011909.1 Corchorus capsularis cultivar CVL-1 contig11930, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10992
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31


Found at i:818 original size:24 final size:24

Alignment explanation


    Indices: 786--834  Score: 80
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        776 TTTCCGTTTC

                           *        
        786 ATTTCAAATTAGTTTGAACTTAGT
          1 ATTTCAAATTAGTTTAAACTTAGT

                              *     
        810 ATTTCAAATTAGTTTAAATTTAGT
          1 ATTTCAAATTAGTTTAAACTTAGT

             
        834 A
          1 A

        835 GGCGACTAGG


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.37, C:0.06, G:0.10, T:0.47


Consensus pattern (24 bp):   
ATTTCAAATTAGTTTAAACTTAGT
Done.